Gchil6958.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6958.t1
Unique NameGchil6958.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length300
Homology
BLAST of Gchil6958.t1 vs. uniprot
Match: A0A2V3J3E8_9FLOR (RNA-binding protein 34 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3E8_9FLOR)

HSP 1 Score: 225 bits (574), Expect = 5.450e-69
Identity = 124/254 (48.82%), Postives = 169/254 (66.54%), Query Frame = 0
Query:   46 LKALEMSHVPDSTSYTHGLGSKGSIQTNTGTQNLKLASNRSAENDYGQSKQTRTIFVGNIDQKATCAEIKELFLKFGPVDSVKLQGLVSDGRHIPKKSGDIDCNYNPVL---RAYVTFKPHPQLLKSMESSCQALNMSVFKNKRIRVLPGAVQRIGKQRISLFVGNLPFDCAEEELVELFKPIAEEANVKLVGVRCNRDSSTGACRGVGFVSFDDILGIRAALSKLGELKIRGRVLRMEQADKKKDKRSKTNKR 296
            L   E   +P   S+   + ++   +  TG +          E +  +S+ +RTIFVGN+D  A+  +I  LF +FG V+ V+++G+VS+ R  PK+   I+      L   +AYV FK H ++   +  +C+ +NM+VFKNK IRV P     +G +R+SLFVGNLPFDC EEELVE F PIAEE+ VKLVGVRCNRD  TGA RGVGFV+FDDILG++AA +K+GE+KIRGRVLR++ A KKKD+R+KT KR
Sbjct:   36 LTEAERRELPHYASFEDRVLAEQRSELGTGGRTCDKDKEAEEEKETFKSRNSRTIFVGNVDMSASENDIARLFARFGEVEEVRIRGIVSNTRKRPKRKPAINNQTAEFLATGQAYVVFKNHERVYTCISEACKDMNMTVFKNKHIRVTPACETTVGPRRMSLFVGNLPFDCMEEELVEAFLPIAEESGVKLVGVRCNRDLDTGAGRGVGFVAFDDILGVQAARNKVGEIKIRGRVLRIDDASKKKDRRTKTFKR 289          
BLAST of Gchil6958.t1 vs. uniprot
Match: A0A0N4WYJ3_HAEPC (Uncharacterized protein n=2 Tax=Haemonchus placei TaxID=6290 RepID=A0A0N4WYJ3_HAEPC)

HSP 1 Score: 92.4 bits (228), Expect = 2.790e-18
Identity = 71/218 (32.57%), Postives = 112/218 (51.38%), Query Frame = 0
Query:   84 NRSAENDYGQSKQTRTIFVGNIDQKATCAEIKELFLKFGPVDSVKLQGLVSDGRHIPKKSGDIDCNYNPV---LRAYVTFKPHPQLLKSMESSCQALNMSVFKNKRIRVLPGAVQRIGKQRISLFVGNLPFDCAEEELVELFKPIAEEANVKLVG-VRCNRDSSTGACRGVGFVSFDDILGIRAALSKLG------ELKI-----RGRVLRMEQADKK 286
            NR  E      ++ RT+FVGN          ++LF ++GP++SV+++G++   + I K+   I  +Y+     L  YV FK    + K++     + N ++    RIRV     +    ++++ FVGNLP D  ++EL E F     E NV  V  VRC RDSS+G  +G+GFV F     +  ALS  G      EL+I     + +V +++QA KK
Sbjct:   10 NRKKEQRMTLDEKKRTLFVGNAPLSMDERSCRKLFSQYGPIESVRMRGVMPPKQTITKRIAHISHSYHEKQNSLNFYVKFKDEESVKKAL-----SYNGTILDRHRIRVDTCTTKADYDRKLTAFVGNLPLDVKDDELAEFF-----EENVGGVSFVRCVRDSSSGMGKGIGFVVFKSPSSLPLALSLTGVEYQKRELRITKVMRKAKVAKVQQARKK 217          
BLAST of Gchil6958.t1 vs. uniprot
Match: A0A7S4N4H5_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4N4H5_GUITH)

HSP 1 Score: 91.3 bits (225), Expect = 6.000e-18
Identity = 62/192 (32.29%), Postives = 100/192 (52.08%), Query Frame = 0
Query:   98 RTIFVGNIDQKATCAEIKELFLKFGPVDSVKLQGLVSDGRHIPKKS----GDIDCNYNPVLRAYVTFKPHPQLLKSMESSCQALNMSVFKNKRIRVLPGAVQRIGKQRISLFVGNLPFDCAEEELVELFKPIAEEANVKLVGVRCNRDSSTGACRGVGFVSFDDILGIRAALSKLGELKIRGRVLRMEQADK 285
            RT+FVG +   +T   IK+ F +FG ++SV+++ +      +PKK+    G ++        AYV FK    + K++       N S+ +  RI+V    + +    R+S+FVGNLPF+  EE L + F    E  NV+++     RD  T   +G G+V+F +   ++ AL K  E K  GR LR+ +A K
Sbjct:   73 RTLFVGGVPLASTRKSIKKFFQEFGFIESVRMRSIPISNPKLPKKTSIALGMVNSE-RETCNAYVRFKEKGSVAKALSK-----NGSLMEGHRIKVDHANISKNYNVRLSVFVGNLPFNAEEESLQKFFSNCGEVTNVRII-----RDKKTSLGKGFGYVTFTNAEEVQLALKK-HEAKFEGRALRVVRAAK 252          
BLAST of Gchil6958.t1 vs. uniprot
Match: A0A2H8TRJ1_9HEMI (RNA-binding protein 34 n=2 Tax=Melanaphis sacchari TaxID=742174 RepID=A0A2H8TRJ1_9HEMI)

HSP 1 Score: 92.8 bits (229), Expect = 1.620e-17
Identity = 65/219 (29.68%), Postives = 118/219 (53.88%), Query Frame = 0
Query:   80 KLASNRSAENDYGQS-----KQTRTIFVGNIDQKATCAEIKELFLKFGPVDSVKLQGLVSDGRHIPKKSGDIDCNYNP---VLRAYVTFKPHPQLLKSMESSCQALNMSVFKNKRIRVLPGAVQRIGKQRIS--LFVGNLPFDCAEEELVELFKPIAEEANVKLVGVRCNRDSSTGACRGVGFVSFDDILGIRAALSKLGELKIRGRVLRMEQADKKKD 288
            KL+  +S++ D   S     K++RT+FVGN+      + IK LF KFG V++ +L+ +      +PK+   +  +++P       YV FK   Q  K++      LN + F+   IRV   A+    KQ +   +F+GNLP++  E+E+ + FK     + V++V     RD++TG  +G G+V F++   +  A+   G+ K++ R +R+++ + KK+
Sbjct:  220 KLSMTKSSDGDIKSSEDYIEKESRTVFVGNVPVNVKMSAIKNLFKKFGEVETTRLRSVAVKNLDVPKRVSIMKGDFHPQRDTANVYVRFKTIEQAQKAL-----VLNATQFEGHTIRV-DMALNTNHKQNMKKGIFIGNLPYNIQEDEIWDYFKDCGTISAVRIV-----RDNATGVSKGFGYVDFENKESVELAMQIQGK-KVQNREIRVKRIETKKN 426          
BLAST of Gchil6958.t1 vs. uniprot
Match: A0A2R6W3A4_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W3A4_MARPO)

HSP 1 Score: 91.7 bits (226), Expect = 5.740e-17
Identity = 71/217 (32.72%), Postives = 104/217 (47.93%), Query Frame = 0
Query:   80 KLASNRSAENDYGQSKQTRTIFVGNIDQKATCAEIKELFLKFGPVDSVKLQGLVSDGRHIPKKSGDIDCNYNP---VLRAYVTFKPHPQLLKSMESSCQAL---NMSVFKNKRIRVLPGAVQRIGKQ---RISLFVGNLPFDCAEEELVELFKPIAEEANVKLVGVRCNRDSSTGACRGVGFVSFDDILGIRAALSKLGELKIRGRVLRMEQADKKK 287
            KL      +ND   +K  RTIFVGN+        +   F ++G V+S +L+ +      +P+++  I  N N     L  Y+ FK         E+S QA    NM  F  K +RV        G +   + S+F+GNLPFD  +E+L+ LF+    E  V+   VR  RD  T A +G GFV F   +G  +AL K     ++ R LR+E+   KK
Sbjct:  374 KLTKQEKVDND---AKLRRTIFVGNVPVNVKAKHLSTEFSQYGAVESARLRSVPIVDVKMPRRAAVITGNLNENRTSLNGYIVFKE--------EASAQAALAHNMKEFAGKHLRVDLAGSYSSGVEYDRKRSIFIGNLPFDAEDEDLITLFQGNTPELEVE--AVRIVRDPQTSAGKGFGFVCFKTKMGAESALDKRDFTLLKNRPLRLERLGSKK 577          
BLAST of Gchil6958.t1 vs. uniprot
Match: UPI000B934F16 (RNA-binding protein 34 n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B934F16)

HSP 1 Score: 89.7 bits (221), Expect = 1.400e-16
Identity = 62/204 (30.39%), Postives = 110/204 (53.92%), Query Frame = 0
Query:   90 DYGQSKQTRTIFVGNIDQKATCAEIKELFLKFGPVDSVKLQGLVSDGRHIPKKSGDIDCNYNP---VLRAYVTFKPHPQLLKSMESSCQALNMSVFKNKRIRVLPGAVQRIGKQRIS--LFVGNLPFDCAEEELVELFKPIAEEANVKLVGVRCNRDSSTGACRGVGFVSFDDILGIRAALSKLGELKIRGRVLRMEQADKKKD 288
            DY + K++RT+FVGN+      + IK LF KFG V++ +L+ +      +PK+   +  +++P       YV FK   Q  K++      LN + F+   IRV   A+    KQ +   +F+GNLP+   E+E+ + FK     + V++V     RD++TG  +G G+V F+    +  A+   G+ K++ R +R+++ + KK+
Sbjct:  173 DYTE-KESRTVFVGNVPVNVKMSAIKNLFKKFGEVETTRLRSVAVKNLEVPKRVSIMKGDFHPQRDTANVYVRFKTIEQAQKAL-----VLNATQFEGHTIRV-DMALNTGHKQNMKKGIFIGNLPYSIQEDEIWDYFKDCGTISAVRIV-----RDNATGVSKGFGYVDFETKESVELAMQIKGK-KVQNREIRIKRIETKKN 363          
BLAST of Gchil6958.t1 vs. uniprot
Match: A0A1I7VYS7_LOALO (Uncharacterized protein n=2 Tax=Loa loa TaxID=7209 RepID=A0A1I7VYS7_LOALO)

HSP 1 Score: 87.4 bits (215), Expect = 4.360e-16
Identity = 72/203 (35.47%), Postives = 107/203 (52.71%), Query Frame = 0
Query:   95 KQTRTIFVGNIDQKATCAEIKELFLKFGPVDSVKLQGLVSDGRHIPKKSGDIDCNYNPVLRAYVTFKPHPQLLKSMESSCQALNMSVFKNKRIRVLPGAVQRIGKQRISLFVGNLPFDCAEEELVELFKPIAEEANVKLVGVRCNRDSSTGACRGVGFVSFDDILGIRAALSKLGELKIRGRVLRMEQADKKKDKRSKTNKRS 297
            ++TRT+FVGN    ++   IK+LF +FG V+SV+L   ++    I KK  DI       L  YV FK      KS E++  ALN   +    +RV     +R    R ++FVGNLP+D +E EL+  F+     + V++V     RDS TG  +G  FV+F D   +  AL   G +  + R LR ++  KK   +S+T +RS
Sbjct:  104 EKTRTVFVGNAPLSSSRKGIKKLFSQFGAVESVRLHCFIAANEKITKKR-DIPSGVRS-LTFYVKFKN----AKSKEAAL-ALNGEKYDGNLLRVDSCCAKRKYNCRTTVFVGNLPYDVSENELIAHFEMSGNVSFVRIV-----RDSRTGNSKGFAFVAFKDSAAVPLALQLDGSI-FKRRPLRTKRVQKKNKVKSQTYQRS 293          
BLAST of Gchil6958.t1 vs. uniprot
Match: A0A5J4VYE3_9EUKA (Putative RNA-binding protein 34 (Fragment) n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4VYE3_9EUKA)

HSP 1 Score: 87.4 bits (215), Expect = 7.550e-16
Identity = 63/192 (32.81%), Postives = 97/192 (50.52%), Query Frame = 0
Query:   93 QSKQTRTIFVGNIDQKATCAEIKELFLKFGPVDSVKLQGL-VSDGRHIPKKSGDIDCNY---NPVLRAYVTFKPHPQLLKSMESSCQALNMSVFKNKRIRVLPGAVQRIGKQRISLFVGNLPFDCAEEELVELFKPIAEEANVKLVGVRCNRDSSTGACRGVGFVSFDDILGIRAALSKLGELKIRGRVLRM 280
            + KQ RTIF+GNI  + T  EIK  F  +G V+S++ + L V     I KK+  I  N+   +     Y+ F    +  K++ +     N      + +RV P   + I  +  SLFVG LP+D  E+EL+  F    E  ++++V     RD  T   +G GFVSF D + + AA +  G   +RG+ LR+
Sbjct:   49 KDKQNRTIFIGNIPLQKTEKEIKNAFKDYGTVESLRFRSLPVDPNAKISKKASAIRGNFIEGSKFKNCYIVFTTADEANKAINAFQDGDNRDALGGRHVRVTPANYKNIDYKH-SLFVGGLPYDVTEDELMGWFSNCGEVNSIRVV-----RDKITRKGKGFGFVSFSDDVSVIAAQALDGTT-MRGQTLRV 233          
BLAST of Gchil6958.t1 vs. uniprot
Match: A0A2L2XVD5_PARTP (Nucleolin-like (Fragment) n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2XVD5_PARTP)

HSP 1 Score: 85.1 bits (209), Expect = 7.950e-16
Identity = 58/191 (30.37%), Postives = 100/191 (52.36%), Query Frame = 0
Query:   99 TIFVGNIDQKATCAEIKELFLKFGPVDSVKLQGLVSDGRHIPKKSGDIDCNYNPVLRAYVTFKPHPQLLKSMESSCQALNMSVFKNKRIRVLPGAVQRIGKQRI-----SLFVGNLPFDCAEEELVELFKPIAEEANVKLVGVRCNRDSSTGACRGVGFVSFDDILGIRAALSKLGELKIRGRVLRMEQAD 284
            T+FVGN+        + +LF  FG + SV+++G VS    IPKK  +I   Y+  L+++  F     + K  ES+  AL+++        +L     + G++++     S+F+GNLPFD A+E +   F+   E   V++V     RD +TG  +G G++ F  I     AL+ L +++I  R +R++  D
Sbjct:    1 TLFVGNLPVSVNRKMLHKLFTSFGQIKSVRMRGAVSTKMGIPKKVAEIKSEYHKGLQSHTGFV----VFKDKESAKNALSLNGTLIDDHHILVDFANQPGEKKLYNNELSVFLGNLPFDVADETVRSAFEECGEIQAVRIV-----RDKNTGVGKGFGYIQFQKIKAKEKALT-LDDVEINSRKIRVKPVD 181          
BLAST of Gchil6958.t1 vs. uniprot
Match: A0A044TBY8_ONCVO (Uncharacterized protein n=2 Tax=Onchocerca TaxID=6281 RepID=A0A044TBY8_ONCVO)

HSP 1 Score: 84.7 bits (208), Expect = 4.150e-15
Identity = 65/189 (34.39%), Postives = 101/189 (53.44%), Query Frame = 0
Query:   98 RTIFVGNIDQKATCAEIKELFLKFGPVDSVKLQGLVSDGRHIPKKSGDIDCNYNPVLRAYVTFKPHPQLLKSMESSCQALNMSVFKNKRIRVLPGAVQRIGKQRISLFVGNLPFDCAEEELVELFKPIAEEANVKLVGVRCNRDSSTGACRGVGFVSFDDILGIRAALSKLGELKIRGRVLRMEQADKK 286
            RT+FVGN    +T   IK+LF +FG V+SV+L  + S+ +   K++   D      L  YV FK      KS E++  ALN   +    +RV     +R    R ++FVGNLP+D +E EL+  F+     + V++V     RDS TG+ +G  FV+F +   ++ AL   G +  + R LR+++  KK
Sbjct:  106 RTVFVGNAPLSSTRKGIKKLFSQFGVVESVRLHYIASNEKITKKRNIPSDVRS---LTFYVKFKD----AKSTEAAL-ALNGEKYDGNLLRVDSCCTKRKYSSRTTVFVGNLPYDVSENELIAHFETSGNVSFVRIV-----RDSKTGSGKGFAFVAFKESEAVQFALQLDGSI-FKRRRLRVKRVQKK 280          
The following BLAST results are available for this feature:
BLAST of Gchil6958.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3E8_9FLOR5.450e-6948.82RNA-binding protein 34 n=1 Tax=Gracilariopsis chor... [more]
A0A0N4WYJ3_HAEPC2.790e-1832.57Uncharacterized protein n=2 Tax=Haemonchus placei ... [more]
A0A7S4N4H5_GUITH6.000e-1832.29Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A2H8TRJ1_9HEMI1.620e-1729.68RNA-binding protein 34 n=2 Tax=Melanaphis sacchari... [more]
A0A2R6W3A4_MARPO5.740e-1732.72Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
UPI000B934F161.400e-1630.39RNA-binding protein 34 n=1 Tax=Myzus persicae TaxI... [more]
A0A1I7VYS7_LOALO4.360e-1635.47Uncharacterized protein n=2 Tax=Loa loa TaxID=7209... [more]
A0A5J4VYE3_9EUKA7.550e-1632.81Putative RNA-binding protein 34 (Fragment) n=1 Tax... [more]
A0A2L2XVD5_PARTP7.950e-1630.37Nucleolin-like (Fragment) n=2 Tax=Parasteatoda tep... [more]
A0A044TBY8_ONCVO4.150e-1534.39Uncharacterized protein n=2 Tax=Onchocerca TaxID=6... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 203..281
e-value: 4.8E-14
score: 62.6
coord: 99..190
e-value: 0.42
score: 9.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 204..279
e-value: 6.7E-14
score: 51.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 98..189
score: 10.291966
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 202..285
score: 14.91398
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 63..190
e-value: 3.1E-12
score: 48.6
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 194..299
e-value: 4.3E-19
score: 70.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availablePANTHERPTHR23236:SF25RNA-BINDING PROTEIN 34coord: 28..289
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 28..289
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 78..192
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 199..294

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004398_piloncontigtig00004398_pilon:360631..361530 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6958.t1Gchil6958.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004398_pilon 360631..361530 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6958.t1 ID=Gchil6958.t1|Name=Gchil6958.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=300bp
MSEASEDRIEKDWDTSDDSQKKSKVPHTYDRFKTPKRQKIDISADLKALE
MSHVPDSTSYTHGLGSKGSIQTNTGTQNLKLASNRSAENDYGQSKQTRTI
FVGNIDQKATCAEIKELFLKFGPVDSVKLQGLVSDGRHIPKKSGDIDCNY
NPVLRAYVTFKPHPQLLKSMESSCQALNMSVFKNKRIRVLPGAVQRIGKQ
RISLFVGNLPFDCAEEELVELFKPIAEEANVKLVGVRCNRDSSTGACRGV
GFVSFDDILGIRAALSKLGELKIRGRVLRMEQADKKKDKRSKTNKRSRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf