Gchil6930.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil6930.t1
Unique Name	Gchil6930.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	327

Homology

[Close]

BLAST of Gchil6930.t1 vs. uniprot
Match: A0A2V3IMQ7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMQ7_9FLOR)

HSP 1 Score: 194 bits (493), Expect = 1.750e-56
Identity = 114/242 (47.11%), Postives = 152/242 (62.81%), Query Frame = 0

Query:   89 LKSVDSRGISLEHRLKEEIKHPLRKPKQTLFATLSFSAFLASPIAISRFVTHAD-SIQQLSINLLINITAVATFGYLTWRQVQFGRRALNSFAGRPQLRDLPI--ASPSEKLAVLPSLLRAPKRMSSLLRRSDVILLIGRRIQMYTYLARCKETFD-VMPS-ALVIFPTDVNS-SEEQFPIQPDAIPDRENDGNADWKAWIADVVPARRNIVVLRISRNDDATAPANAFLVEDGDAKSVSLP 324
            L+ +D  GISLEHRL+EEIKHPLRKPKQTLF   +FSA L   I + RF   +D S  QL  N+ +N+TA + F YLTW QVQFGRR+LNS AG PQ RDLPI   S S  L +   L   P+R+SSLL   D +L++GR+ ++  YL RC+ T +   P+ ALV+F TD +  +EE +    DAI   E   + DW +W+A+ +P++RNI V R +R+D A   A+ + V      S  LP
Sbjct:   51 LQRLDRNGISLEHRLREEIKHPLRKPKQTLFGAFAFSATLGFFITLGRFAAVSDDSATQLFTNVAVNLTAASLFAYLTWTQVQFGRRSLNSIAGIPQARDLPIKRVSSSPSLTIPSWLSTGPQRLSSLLTTFDTVLVVGRKSELEKYLKRCQSTAENPQPAVALVVFATDFDKRNEEAYASGADAIALGEVKRDKDWLSWLANTLPSKRNIAVFRFARSDKAVNAADTYFVTQDLPASAPLP 292

[Close]

BLAST of Gchil6930.t1 vs. uniprot
Match: R7Q1X8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q1X8_CHOCR)

HSP 1 Score: 176 bits (445), Expect = 6.970e-49
Identity = 100/243 (41.15%), Postives = 142/243 (58.44%), Query Frame = 0

Query:   85 SGVDLKSVDSRGISLEHRLKEEIKHPLRKPKQTLFATLSFSAFLASPIAISRFVTHADSIQQLSINLLINITAVATFGYLTWRQVQFGRRALNSFAGRPQLRDLPIASPSEKLAVLPSLLR--APKRMSSLLRRSDVILLIGRRIQMYTYLARCKE-TFDVMPSALVIFPTDVNSSEEQFPIQPDAIPDRENDGNADWKAWIADVVPARRNIVVLRISRNDDATAPANAFLVEDGDAKSVSLP 324
            +G DL+  D+ GISLE+RL+EEI HPLRKPK TLF TL+FSA + +  A++R     D+  Q++ N+ ++  AV  FGYL WR+VQFGRR+LNS AGRP+ RDL +    EK      ++   + +R+ SL R  DV+++ GR I +  YL R       V  S ++  PTD    ++ F     A+   E D   DW +WI D VP RRN+ +  I   D   + AN ++V  GD  ++ LP
Sbjct:   91 TGPDLQKRDAGGISLENRLREEIAHPLRKPKLTLFGTLAFSATIGALFALARLARGDDTPAQVAQNVAVDTIAVGLFGYLAWREVQFGRRSLNSLAGRPEARDLQVMVLDEKATQAAPVVGDGSGRRLGSLFREKDVVVVAGRAIDVRKYLNRVHAGEGGVNLSVVIALPTDAQRQDDAFEGAA-AVASGEADNTKDWTSWIGDAVPPRRNVALFSIEAGDKGQSAANTYVVAVGDPMTLPLP 332

The following BLAST results are available for this feature:

BLAST of Gchil6930.t1 vs. uniprot

BLAST of Gchil6930.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IMQ7_9FLOR	1.750e-56	47.11	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7Q1X8_CHOCR	6.970e-49	41.15	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021883	Protein LOW PSII ACCUMULATION 1-like	PFAM	PF11998	DUF3493	coord: 99..167 e-value: 6.0E-11 score: 42.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..77
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 167..326
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..117
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 144..166
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 139..143
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 118..138
None	No IPR available	TMHMM	TMhelix		coord: 118..140
None	No IPR available	TMHMM	TMhelix		coord: 147..166

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004376_pilon	contig	tig00004376_pilon:734505..735485 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6930.t1	Gchil6930.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004376_pilon 734505..735485 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil6930.t1 ID=Gchil6930.t1|Name=Gchil6930.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=327bp
MWAFCIPSSFPTVARRRLSSHAAPRPSRLPIVAARKSSSSDSKRPLSKPK
ASSGFSAARDDTETLKQLPNPEESSDAAVEDKLKSGVDLKSVDSRGISLE
HRLKEEIKHPLRKPKQTLFATLSFSAFLASPIAISRFVTHADSIQQLSIN
LLINITAVATFGYLTWRQVQFGRRALNSFAGRPQLRDLPIASPSEKLAVL
PSLLRAPKRMSSLLRRSDVILLIGRRIQMYTYLARCKETFDVMPSALVIF
PTDVNSSEEQFPIQPDAIPDRENDGNADWKAWIADVVPARRNIVVLRISR
NDDATAPANAFLVEDGDAKSVSLPFK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR021883	LPA1-like