Gchil6845.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6845.t1
Unique NameGchil6845.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length119
Homology
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BLAST of Gchil6845.t1 vs. uniprot
Match: A0A2V3IH52_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH52_9FLOR)

HSP 1 Score: 109 bits (272), Expect = 9.490e-29
Identity = 54/93 (58.06%), Postives = 72/93 (77.42%), Query Frame = 0 
Query:    4 QPPQTQSSPFVSQKQLSEFIGKQVVVAGALVTATPTNLVLDAGDGSNITVMRNQPPSIQFQIGTKLLIRGMVKPDLSVAESSFFPPSDVGNNF 96
            QP  + +SPFV+QKQL+  + ++VVVAG ++ AT T L+LD  + + ITV RNQPP++  + GTKLL+RGMVKPDLSVAES  FP +DVG+NF
Sbjct:    2 QPSPSHASPFVTQKQLNAHMNQEVVVAGKVLNATQTTLLLDGENSTTITVHRNQPPTMMIETGTKLLVRGMVKPDLSVAESPSFPATDVGDNF 94
The following BLAST results are available for this feature:
BLAST of Gchil6845.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IH52_9FLOR9.490e-2958.06Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 8..118
e-value: 1.1E-15
score: 59.6
IPR013970Replication factor A protein 3PFAMPF08661Rep_fac-A_3coord: 9..111
e-value: 3.8E-8
score: 33.6
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 10..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:381536..381951 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6845.t1Gchil6845.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004376_pilon 381536..381951 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6845.t1 ID=Gchil6845.t1|Name=Gchil6845.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=119bp
MQQQPPQTQSSPFVSQKQLSEFIGKQVVVAGALVTATPTNLVLDAGDGSN
ITVMRNQPPSIQFQIGTKLLIRGMVKPDLSVAESSFFPPSDVGNNFDLSL
FNQAAAVTNHINYSHIFA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013970Rfa2
IPR012340NA-bd_OB-fold