Gchil6813.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6813.t1
Unique NameGchil6813.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length251
Homology
BLAST of Gchil6813.t1 vs. uniprot
Match: A0A2V3J551_9FLOR (Sister chromatid cohesion protein PDS5-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J551_9FLOR)

HSP 1 Score: 229 bits (584), Expect = 3.550e-65
Identity = 116/194 (59.79%), Postives = 142/194 (73.20%), Query Frame = 0
Query:   57 LDAIDSYPSLFAEFLNRQRDFNAEICADIAGAFGFVLVVHPKHAKLFESMLKDRAIDKDDHVRCIAVESIGKCIHRASESLLQLLDLRLCDLKPQGRKAALAQVYELFTNVTPSYSRPSPSSEPNEERNVFRDWGGKKESSGEDLERGRPRSSIEPVTMNDVLQTCMLTHSWPPDAILRSNMALDDAGDQKSAR 250
            +D IDSYPSLFAEFLNRQRD NA I A +A + G ++V HPKHA     ML+DRAIDKDDHVRC+A+ES+GKC HRAS+SLL++L  RLCD K Q RKAALAQ+  LFTN  PSYSRPS   EP  + N   DW  K +SS E+  + R R+S+EP +  DVL+T ML  SW PD ++RS+MAL DAGDQ + +
Sbjct:  434 VDVIDSYPSLFAEFLNRQRDVNAHIRAQVAMSLGALIVSHPKHAHDLIKMLEDRAIDKDDHVRCVALESVGKCFHRASDSLLRVLASRLCDRKAQVRKAALAQICHLFTNPNPSYSRPSSLMEPRGDANHSMDWQAKSDSSVENGNKTRARTSMEPSSQQDVLETRMLNLSWLPDVLIRSHMALSDAGDQSTVQ 627          
BLAST of Gchil6813.t1 vs. uniprot
Match: R7Q7H4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7H4_CHOCR)

HSP 1 Score: 85.5 bits (210), Expect = 2.930e-15
Identity = 57/197 (28.93%), Postives = 98/197 (49.75%), Query Frame = 0
Query:   61 DSYPSLFAEFLNRQRDFNAEICADIAGAFGFVLVVHPKHAKLFESMLKDRAIDKDDHVRCIAVESIGKCIHRASESLLQLLDLRLCDLKPQGRKAALAQVYEL-----FTNVTPSYSRPSP---SSEPNEERNVFRDWGGKKESSGEDLERGRPRSSIEPVTMNDVLQTCMLTHSWPPDAILRSNMALDDAGDQKSA 249
            +SYP+LF EFL+R +D N  I  ++      ++V HPKH +  + +L++R +D+++ VR +A+ SI +  + ASE LLQ+L  RL D K   R+  L Q+  +     FT    +++   P   S  P + R    D     E +  + +     S  +  +     Q   L   W P+ +++++ AL  A D  +A
Sbjct:  429 ESYPTLFVEFLSRNKDVNPAIREEVCAVLPKLMVTHPKHREDLDIILRERVLDREESVRLVAIRSISEAANVASEKLLQILATRLRDRKAFLRQETLKQLVHIYLASSFTPTKQNFTDDGPRIGSGPPEQARISSTDRSQSDEENRSEAKEVEGASENKKKSKQPKAQVNNL--GWLPNTLVQAHSALKGAEDFTTA 623          
The following BLAST results are available for this feature:
BLAST of Gchil6813.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J551_9FLOR3.550e-6559.79Sister chromatid cohesion protein PDS5-like n=1 Ta... [more]
R7Q7H4_CHOCR2.930e-1528.93Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 41..179
e-value: 1.5E-5
score: 26.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..207
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 64..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1326616..1327472 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6813.t1Gchil6813.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004416_pilon 1326616..1327472 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6813.t1 ID=Gchil6813.t1|Name=Gchil6813.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=251bp
MVCAKDVFETFRFSLLKQLATVKKFFIFCDDDQGRAFEKGGAGCHVSTAR
ASAAVFLDAIDSYPSLFAEFLNRQRDFNAEICADIAGAFGFVLVVHPKHA
KLFESMLKDRAIDKDDHVRCIAVESIGKCIHRASESLLQLLDLRLCDLKP
QGRKAALAQVYELFTNVTPSYSRPSPSSEPNEERNVFRDWGGKKESSGED
LERGRPRSSIEPVTMNDVLQTCMLTHSWPPDAILRSNMALDDAGDQKSAR
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold