Gchil6780.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6780.t1
Unique NameGchil6780.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length128
Homology
BLAST of Gchil6780.t1 vs. uniprot
Match: A0A2V3J4M2_9FLOR (Sm-like protein LSM7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4M2_9FLOR)

HSP 1 Score: 138 bits (347), Expect = 6.290e-40
Identity = 66/100 (66.00%), Postives = 80/100 (80.00%), Query Frame = 0
Query:   28 RKSPQHRLLHDLSKHAGDRVQVQLTGGRLVRGVLKGWDPLLNLVLDDAVEQLRDPLDASALVARHRRLGLLIARGTSVITIAPLHGLESIHNPFLAQPTV 127
            RK+P H+++ DLSKH    VQV LTGGR ++GVLKGWDPLLNLVLD+ VEQLRDP+D   L  + R+LGLL+ARGTSV+TIAP+ GLE I NPFL +P V
Sbjct:   10 RKNPPHKVILDLSKHINKNVQVHLTGGRQIQGVLKGWDPLLNLVLDEVVEQLRDPVDPYKLSGKQRKLGLLVARGTSVMTIAPVDGLEQIENPFLNKPLV 109          
BLAST of Gchil6780.t1 vs. uniprot
Match: A0A6T6LUI4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6LUI4_9RHOD)

HSP 1 Score: 114 bits (286), Expect = 9.900e-31
Identity = 56/93 (60.22%), Postives = 67/93 (72.04%), Query Frame = 0
Query:   32 QHRLLHDLSKHAGDRVQVQLTGGRLVRGVLKGWDPLLNLVLDDAVEQLRDPLDASALVARHRRLGLLIARGTSVITIAPLHGLESIHNPFLAQ 124
            Q  ++ DLSKH    V V+L GGR +RG LKGWDPL+NLVLDDAVE LRDP D   L  + R+LGLL+ARGTSV+TI P  G+E   NPF+ Q
Sbjct:   10 QRPVVLDLSKHVERSVLVKLVGGRQIRGTLKGWDPLVNLVLDDAVEDLRDPTDPYILTGKARKLGLLVARGTSVMTICPTDGMEETENPFVEQ 102          
BLAST of Gchil6780.t1 vs. uniprot
Match: R7QQI6_CHOCR (Sm-like protein, LSm7 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQI6_CHOCR)

HSP 1 Score: 116 bits (291), Expect = 6.270e-30
Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 0
Query:   28 RKSPQHRLLHDLSKHAGDRVQVQLTGGRLVRGVLKGWDPLLNLVLDDAVEQLRDPLDASALVARHRRLGLLIARGTSVITIAPLHGLESIHNPFL 122
            RKS   +++ DLSKHA   VQV+L+GGR V G+LKGWD LLN+VLD+AVE LRDP D   L  + R++GLL+ARGTSV+TI+P+ G+  I NPF+
Sbjct:  135 RKSQTPKVILDLSKHADKEVQVRLSGGRQVHGILKGWDQLLNVVLDEAVEDLRDPTDPYRLSGKERKIGLLVARGTSVMTISPVDGVTQIENPFV 229          
BLAST of Gchil6780.t1 vs. uniprot
Match: Q7XY62_GRIJA (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY62_GRIJA)

HSP 1 Score: 110 bits (274), Expect = 8.060e-29
Identity = 53/94 (56.38%), Postives = 71/94 (75.53%), Query Frame = 0
Query:   28 RKSPQHRLLHDLSKHAGDRVQVQLTGGRLVRGVLKGWDPLLNLVLDDAVEQLRDPLDASALVARHRRLGLLIARGTSVITIAPLHGLESIHNPF 121
            +K    +++ DLSK++   V V+L GGR VRGVLKGWDPLLNLVLD+ VEQLRD  D+  L  + R+LGL++ RGTSV+T++P+ G+E I NPF
Sbjct:   11 KKGASQKVILDLSKYSDKDVIVRLAGGRQVRGVLKGWDPLLNLVLDEVVEQLRDVDDSYRLSGKERKLGLVVVRGTSVMTVSPVDGVEQIENPF 104          
BLAST of Gchil6780.t1 vs. uniprot
Match: A0A139AMB5_GONPJ (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AMB5_GONPJ)

HSP 1 Score: 102 bits (253), Expect = 2.790e-25
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 0
Query:   38 DLSKHAGDRVQVQLTGGRLVRGVLKGWDPLLNLVLDDAVEQLRDPLDASALVARHRRLGLLIARGTSVITIAPLHGLESIHNPF 121
            DL+++   R+ V+  GGR V GVLKG DPLLNLVLD+A EQLRDP D S L  + R+LGL++ RGTSV+ I+PL G+E I NPF
Sbjct:   54 DLARYLDKRIFVKFAGGREVTGVLKGHDPLLNLVLDEATEQLRDPEDPSKLSGKSRQLGLMVCRGTSVVLISPLDGMEEIANPF 137          
BLAST of Gchil6780.t1 vs. uniprot
Match: UPI0008F9BC15 (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9BC15)

HSP 1 Score: 100 bits (250), Expect = 3.620e-25
Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = 0
Query:   38 DLSKHAGDRVQVQLTGGRLVRGVLKGWDPLLNLVLDDAVEQLRDPLDASALVARHRRLGLLIARGTSVITIAPLHGLESIHNPFLAQPT 126
            DLSK+   +++V+  GGR V G+LKG+DPL+NLVLD  +E LRDP D   L    R LGL++ RGTSV+ I PL GLESI NPF+ Q T
Sbjct:   23 DLSKYLEKKIKVKFAGGREVSGILKGYDPLVNLVLDSTIEYLRDPDDPYKLTDDTRMLGLVVCRGTSVVLICPLDGLESIPNPFVPQDT 111          
BLAST of Gchil6780.t1 vs. uniprot
Match: M2XZX7_GALSU (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XZX7_GALSU)

HSP 1 Score: 100 bits (249), Expect = 4.710e-25
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 0
Query:   38 DLSKHAGDRVQVQLTGGRLVRGVLKGWDPLLNLVLDDAVEQLRDPLDASALVARHRRLGLLIARGTSVITIAPLHGLESIHNPF 121
            D+SK+   RV V+L GGR V G+L+GWDPL+NLVLD+AVEQLRDP D      + R+LGL++ RGTS++++ P+ G E I NPF
Sbjct:   20 DVSKYLDVRVYVRLLGGRQVSGILRGWDPLVNLVLDEAVEQLRDPEDPYKTTDKERKLGLVVIRGTSLVSVYPVEGAEEIVNPF 103          
BLAST of Gchil6780.t1 vs. uniprot
Match: A0A8I6RNP9_CIMLE (Uncharacterized protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RNP9_CIMLE)

HSP 1 Score: 100 bits (248), Expect = 7.270e-25
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 0
Query:   38 DLSKHAGDRVQVQLTGGRLVRGVLKGWDPLLNLVLDDAVEQLRDPLDASALVARHRRLGLLIARGTSVITIAPLHGLESIHNPFLAQ 124
            DLSK+   +++V+ +GGR   G+LKG+DPLLNLVLD+  E LRDP DA  L    R LGL++ RGTSV+ I P+ G+ESI NPF++Q
Sbjct:   23 DLSKYLDKQIRVKFSGGREAAGILKGYDPLLNLVLDNTTEYLRDPDDAYKLTEDTRMLGLVVCRGTSVVLICPVDGMESIPNPFISQ 109          
BLAST of Gchil6780.t1 vs. uniprot
Match: A0A4P9Z8I4_9ASCO (LSM-domain-containing protein n=1 Tax=Metschnikowia bicuspidata TaxID=27322 RepID=A0A4P9Z8I4_9ASCO)

HSP 1 Score: 101 bits (251), Expect = 7.760e-25
Identity = 50/93 (53.76%), Postives = 65/93 (69.89%), Query Frame = 0
Query:   31 PQHRLLHDLSKHAGDRVQVQLTGGRLVRGVLKGWDPLLNLVLDDAVEQLRDPLDASALVARHRRLGLLIARGTSVITIAPLHGLESIHNPFLA 123
            P+   + DL K+ G +VQV+  GGR V GVLKG+D L+NLVL+D VE LRDP D S L  + R LG +I RG  ++T++PLHG E+I NPF A
Sbjct:   55 PKKEAIVDLHKYFGQQVQVKFVGGRYVEGVLKGFDQLMNLVLEDVVETLRDPEDLSILTDQTRPLGKVIVRGPQMLTLSPLHGTENISNPFAA 147          
BLAST of Gchil6780.t1 vs. uniprot
Match: A0A6P7FQ17_DIAVI (U6 snRNA-associated Sm-like protein LSm7 n=2 Tax=Chrysomelidae TaxID=27439 RepID=A0A6P7FQ17_DIAVI)

HSP 1 Score: 99.4 bits (246), Expect = 1.680e-24
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 0
Query:   38 DLSKHAGDRVQVQLTGGRLVRGVLKGWDPLLNLVLDDAVEQLRDPLDASALVARHRRLGLLIARGTSVITIAPLHGLESIHNPFLAQ 124
            DLSK+    ++V+  GGR   GVLKG+DPLLNLVLD+  E LRDP D   L+   R+LGL++ RGTSV+ I P+ G+ESI NPF++Q
Sbjct:   29 DLSKYLEKTIRVKFAGGREASGVLKGYDPLLNLVLDNTSEYLRDPDDPYKLIEDTRQLGLVVCRGTSVVLICPMDGMESIQNPFISQ 115          
The following BLAST results are available for this feature:
BLAST of Gchil6780.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4M2_9FLOR6.290e-4066.00Sm-like protein LSM7 n=1 Tax=Gracilariopsis chorda... [more]
A0A6T6LUI4_9RHOD9.900e-3160.22Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
R7QQI6_CHOCR6.270e-3058.95Sm-like protein, LSm7 n=1 Tax=Chondrus crispus Tax... [more]
Q7XY62_GRIJA8.060e-2956.38U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=G... [more]
A0A139AMB5_GONPJ2.790e-2559.52U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=G... [more]
UPI0008F9BC153.620e-2556.18U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=B... [more]
M2XZX7_GALSU4.710e-2555.95U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=G... [more]
A0A8I6RNP9_CIMLE7.270e-2555.17Uncharacterized protein n=1 Tax=Cimex lectularius ... [more]
A0A4P9Z8I4_9ASCO7.760e-2553.76LSM-domain-containing protein n=1 Tax=Metschnikowi... [more]
A0A6P7FQ17_DIAVI1.680e-2455.17U6 snRNA-associated Sm-like protein LSm7 n=2 Tax=C... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 37..110
e-value: 5.4E-15
score: 65.8
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 38..109
e-value: 8.3E-16
score: 57.4
NoneNo IPR availablePIRSFPIRSF037188Lsm7coord: 1..126
e-value: 1.4E-34
score: 116.4
NoneNo IPR availableGENE3D2.30.30.100coord: 9..119
e-value: 1.4E-22
score: 81.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availablePANTHERPTHR10553:SF5U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7coord: 28..124
IPR044641Sm-like protein Lsm7/SmGPANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 28..124
IPR017132Sm-like protein Lsm7CDDcd01729LSm7coord: 38..121
e-value: 1.71732E-37
score: 120.383
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 36..112

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1162840..1163305 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6780.t1Gchil6780.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004416_pilon 1162840..1163305 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6780.t1 ID=Gchil6780.t1|Name=Gchil6780.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=128bp
MSHRQRAAERADKGDKSDKSGDKGDRARKSPQHRLLHDLSKHAGDRVQVQ
LTGGRLVRGVLKGWDPLLNLVLDDAVEQLRDPLDASALVARHRRLGLLIA
RGTSVITIAPLHGLESIHNPFLAQPTV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR044641Lsm7/SmG-like
IPR017132Lsm7
IPR010920LSM_dom_sf