Gchil6722.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6722.t1
Unique NameGchil6722.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length631
Homology
BLAST of Gchil6722.t1 vs. uniprot
Match: A0A2V3J4W7_9FLOR (Protein transport protein SEC23 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4W7_9FLOR)

HSP 1 Score: 601 bits (1550), Expect = 4.050e-203
Identity = 391/874 (44.74%), Postives = 470/874 (53.78%), Query Frame = 0
Query:   14 SQLSDTAISSPAPQSFLDRFLGRSVSSTTSSPAPPNPNKAEETLRKLPETKT-QSLPVENVTSAVATLGLSENSN-----TQQITQIAPEHQNSAEPAHTPSEYEKHTAAVSRNVKSQMHSVEKTPEEVADEEEDTLIRVNADTESLLSERRPSHPILRFSGGKALLAHDALENSGLPLGFVW-------------------------------------------------------------------------------------------GAIILIVDENLESQEAEWARTATAAVHIAAAESGLRFALLTTGSGCSAAVRSDDENTLPSMEMMSVATASKLTTNDKERFFLNPPSSVISGTAHTNGTYAELQKAPTDVFISPRAPSAFMGEERPPLENELD-EETEPKKHLVR------------------------------------------------------------------------------------------------------------------------------------------------------------------VIGPAFPTASPHTYAVPGTDPITGFCVMLKPNLSTEVGTDPPSHAVLQLAAKSSKVTVVVTVRIPLTTIGEEYFSDIDAEICALILGKACVVSNGALTKPSIACRSLDVTVQRLLLGSEKAVGVVRLLYELRQGLLLGQHVHPNISLILRSFFLRSECALASLLMSPRLFTNVMTDDATGLMAEVQLEKRFLKDDAVHVLDTGFNVFVYVGSGASVEAEEAISESARAVAARRASPCQLWKLKPGKDAEYLLDMYLSPTNRATGRRRLEPFEQGFVPYCASLARGSSTVKALQQ 627
            SQ+ +T I      SFL RFLGRS+S+ +S P P   +   ET      T   Q +P + VTSAVA++ L + +N     + Q +   P HQN  E   TP+         ++    Q     KT E+VADE EDTLI+V  DT+SLL E RPSHPILRFS G AL+ H+AL+ +GLPLGFVW                                                                                           GAIILI+DENLE +EA+WARTA AAVH+AAAE GLRFALLT GSGCS AVR DD+ +  S EM+S A ASKLTT +KERFFLNPP+SV+SGTA+ NGTY EL+KAPTD FI+PRA SAF+ E       + D EE +P++ +VR                                                                                                                                                                  VIGPAFPTAS HTYAVPG DPITGFCV+LK  ++ E   D  SHAV+QLAAK+  +T VVTVRIPLT    EY + +DAEICALILGKAC+VS GALT+PSI+ +++D+TVQRLLLGSEKA GV RLL+ELR+GLLLGQHVH +ISL+LRSFFLRS+ +LASLLMSPRLFTN M DDATGLMAEVQLEK ++ D+AV VLDTGFNVFVYVG  AS E+E+AIS+SARAVAA+R SPCQLWKL PG DAEYLL+ YLSP++ +  RRRL+  EQGF+ YC SLARGS +VKAL+Q
Sbjct:   20 SQIPETDIPVSPVHSFLSRFLGRSISNPSSPPIPATSSTPHETTNPKASTNAPQQVPADEVTSAVASIHLDQENNLDPDVSPQTSSSLP-HQNEDEI--TPN-------GTNQTPAEQKLPPAKTLEQVADEAEDTLIQVKPDTDSLLFEGRPSHPILRFSAGNALIDHNALDKTGLPLGFVWSPFGDLREVHRIPKAPYRCGTCGSFVAKGNGAEGLLAGSSRWTCAFCGRNDNDVGDTPPEKLKDSTSYPQLFSDTVQYEQPQQPPTPINRRGAIILIIDENLEEEEADWARTAVAAVHVAAAERGLRFALLTIGSGCSVAVRRDDDTSAASFEMLSAARASKLTTTEKERFFLNPPASVVSGTAYANGTYEELEKAPTDPFITPRAASAFVAERDGATAEKKDGEEGQPRRRVVRLPADAESRRLDVAIVVAFELIKDIADSESTRILSLITGPPTLAEHALRTSSPRPLSGTAPDEAKLESSESFVALSKLYEQVGSKAGDMRIALDFLCFGAEDGFAGEILLGAAKRSRGGLLYSATHTFSSAPALAEAAVFLVQRSTNPGVVSIRVSSPLSVARVIGPAFPTASQHTYAVPGVDPITGFCVVLKSQIAPEADADVLSHAVVQLAAKAGNITRVVTVRIPLTKNVHEYMNSLDAEICALILGKACIVSGGALTRPSISRQAVDLTVQRLLLGSEKATGVARLLFELRRGLLLGQHVHGDISLVLRSFFLRSDVSLASLLMSPRLFTNAMADDATGLMAEVQLEKMYVTDEAVLVLDTGFNVFVYVGPRASKESEDAISQSARAVAAKRISPCQLWKLTPGPDAEYLLETYLSPSSESKSRRRLDALEQGFIAYCTSLARGSKSVKALKQ 883          
BLAST of Gchil6722.t1 vs. uniprot
Match: R7QR79_CHOCR (Protein transport protein SEC23 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QR79_CHOCR)

HSP 1 Score: 355 bits (911), Expect = 6.280e-110
Identity = 201/353 (56.94%), Postives = 244/353 (69.12%), Query Frame = 0
Query:  278 VISGTAHTNGTYAELQKAPTDVFISPRAPSAFMGEERPPLENELDEETEPKKHLVRVIGPAFPTASPHTYAVPGTDPITGFCVMLKPNLSTEVGTDPPSHAVLQLAAKSSKVTVVVTVRIPLTTIGEEYFSDIDAEICALILGKACVVSNGALTKPSIACRSLDVTVQRLLLGSEKAVGVVRLLYELRQGLLLGQHVHPNISLILRSFFLRSECALASLLMSPRLFTNVMTDDATGLMAEVQLEKRFLKDDAVHVLDTGFNVFVYVGSGASVEAEEAISESARAVAARRASPCQLWKLKPGKDAEYLLDMYLSPTN--RATGRR--RLEPFEQGFVPYCASLARGSSTVKALQ 626
            ++   +H+  T A   +A T +   P  P         PL             + RVIGPAFPTA+P TYA+PG DP  GF V+LKP    E  +D P+HAV+QLAAKS + T VVTVRIPLTT    Y  +ID EICALILGKACVVS GAL  P IA RS+DV+V+RLL GSE + GVVRLLYELR+GLL+ + V P+ SLILRSFFLR+EC++ASLLMSPR FTN M+ +  GLM EV L+K ++  DAV VLDTGFNVFVYVG  AS + EEAISESAR+VA +R +PCQLWKL+PG DA+YLL+ YLSPT+  ++ G       P EQGF+ YC SLA  S TV+ LQ
Sbjct:  361 LVYAASHSFSTAAAFAEAATFLSQRPTRPGVVAIRVSSPLA------------VARVIGPAFPTAAPQTYAIPGVDPTAGFTVILKPKQGIEEQSDLPAHAVVQLAAKSLESTRVVTVRIPLTTSIPHYLKNIDVEICALILGKACVVSGGALFHPHIAARSIDVSVRRLLRGSEASAGVVRLLYELRRGLLIERQVDPDCSLILRSFFLRAECSIASLLMSPRFFTNAMSAEGGGLMTEVPLQKSYVTKDAVLVLDTGFNVFVYVGEEASPQVEEAISESARSVATQRIAPCQLWKLRPGHDADYLLESYLSPTDPVKSIGSSIGSATPTEQGFIQYCKSLAPDSITVRLLQ 701          
BLAST of Gchil6722.t1 vs. uniprot
Match: A0A2V3IL24_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL24_9FLOR)

HSP 1 Score: 228 bits (580), Expect = 8.690e-68
Identity = 118/173 (68.21%), Postives = 143/173 (82.66%), Query Frame = 0
Query:  445 QRLLLGSEKAVGVVRLLYELRQGLLLGQHVHPNISLILRSFFLRSECALASLLMSPRLFTNVMTDDATGLMAEVQLEKRFLKDDAVHVLDTGFNVFVYVGSGASVEAEEAISESARAVAARRASPCQLWKLKPGKDAEYLLDMYLSPTNRATGRRRLEPFEQGFVPYCASLAR 617
            QRLLLGSEKA GV RLL+EL +GLLLGQHVH +ISL+LRSFFL S+ +LASLLM PRLFTN M DDATGLMAEVQLEK ++ D+AV VLDTGFNVFVYVG  AS ++E+A+S+SA AVAA+  SPC+LWKL P +DAEY+L+ YLSP++ +  RRRL+  + GF+ Y  SLAR
Sbjct:    2 QRLLLGSEKATGVARLLFELHRGLLLGQHVHVDISLVLRSFFLCSDVSLASLLMLPRLFTNAMADDATGLMAEVQLEKMYVTDEAVPVLDTGFNVFVYVGPRASKKSEDALSQSAGAVAAKNMSPCRLWKLTPRRDAEYILETYLSPSSESKSRRRLDAPKPGFIAYWTSLAR 174          
The following BLAST results are available for this feature:
BLAST of Gchil6722.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J4W7_9FLOR4.050e-20344.74Protein transport protein SEC23 n=1 Tax=Gracilario... [more]
R7QR79_CHOCR6.280e-11056.94Protein transport protein SEC23 n=1 Tax=Chondrus c... [more]
A0A2V3IL24_9FLOR8.690e-6868.21Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029006ADF-H/Gelsolin-like domain superfamilyGENE3D3.40.20.10Severincoord: 497..593
e-value: 1.3E-5
score: 27.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
IPR036180Gelsolin-like domain superfamilySUPERFAMILY82754C-terminal, gelsolin-like domain of Sec23/24coord: 510..578

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:536258..538986 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6722.t1Gchil6722.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004416_pilon 536258..538986 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6722.t1 ID=Gchil6722.t1|Name=Gchil6722.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=631bp
MTLTNQTPDSSVVSQLSDTAISSPAPQSFLDRFLGRSVSSTTSSPAPPNP
NKAEETLRKLPETKTQSLPVENVTSAVATLGLSENSNTQQITQIAPEHQN
SAEPAHTPSEYEKHTAAVSRNVKSQMHSVEKTPEEVADEEEDTLIRVNAD
TESLLSERRPSHPILRFSGGKALLAHDALENSGLPLGFVWGAIILIVDEN
LESQEAEWARTATAAVHIAAAESGLRFALLTTGSGCSAAVRSDDENTLPS
MEMMSVATASKLTTNDKERFFLNPPSSVISGTAHTNGTYAELQKAPTDVF
ISPRAPSAFMGEERPPLENELDEETEPKKHLVRVIGPAFPTASPHTYAVP
GTDPITGFCVMLKPNLSTEVGTDPPSHAVLQLAAKSSKVTVVVTVRIPLT
TIGEEYFSDIDAEICALILGKACVVSNGALTKPSIACRSLDVTVQRLLLG
SEKAVGVVRLLYELRQGLLLGQHVHPNISLILRSFFLRSECALASLLMSP
RLFTNVMTDDATGLMAEVQLEKRFLKDDAVHVLDTGFNVFVYVGSGASVE
AEEAISESARAVAARRASPCQLWKLKPGKDAEYLLDMYLSPTNRATGRRR
LEPFEQGFVPYCASLARGSSTVKALQQMKD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029006ADF-H/Gelsolin-like_dom_sf
IPR036180Gelsolin-like_dom_sf