Gchil6607.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6607.t1
Unique NameGchil6607.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length256
Homology
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BLAST of Gchil6607.t1 vs. uniprot
Match: A0A2V3J1H9_9FLOR (Vacuolar protein sorting-associated protein 37A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1H9_9FLOR)

HSP 1 Score: 300 bits (768), Expect = 1.010e-99
Identity = 159/256 (62.11%), Postives = 202/256 (78.91%), Query Frame = 0 
Query:    1 MWTGSSGTYRTTPPTQAPSDAAHSVWSNEDAGPSSYMWDRDNNSSRFPHRINRSSSQSTTLEMNSQYPASS-RSQDLVDSVGGIPDAPRSFPELESMSLRDLTVLHEERARFDDFVSKHQYQQQLDSIVSRERNKVEVIEREHIAVSARMHEALDEQALEKLCENVAKLETEVSTLQKQKDEWIEHNSPERLIERLRVAIHESETKAEALEKSMLSSSMHFDDFVAQYIACRQKYHERMWKLEQLQMNMKKRSFGR 255
            MWTGSSG YR +  TQ   DA+H  W+++DA  + YMW+RD  S+R  HR + SS+ ++ L+ +   P S  R+ ++  S  G+PD P+SFPELESMSLRDL +LHEERARFDDFVSKHQYQQQLDSIVS+ R  V+ +EREH+ ++ARM EA+D++ALEKL  +VA+LE EV  L KQK+EW+  NSPERL+ERLR A+ ESE+ +EALEK+MLSSSMHFD+F++QYIACRQKYHER  KLEQLQM +KK+SFGR
Sbjct:    1 MWTGSSGAYRASQSTQPTGDASHPPWNSQDARGTGYMWERDEVSNRVSHRSSPSSTTNSGLDASQSGPYSGPRAPEVDASADGLPDPPKSFPELESMSLRDLRLLHEERARFDDFVSKHQYQQQLDSIVSKVRANVDALEREHVTITARMDEAVDDEALEKLRRDVAELEKEVQALHKQKEEWLGQNSPERLMERLRTAMRESESTSEALEKNMLSSSMHFDEFLSQYIACRQKYHERSLKLEQLQMEVKKKSFGR 256
The following BLAST results are available for this feature:
BLAST of Gchil6607.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J1H9_9FLOR1.010e-9962.11Vacuolar protein sorting-associated protein 37A n=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 158..185
NoneNo IPR availableCOILSCoilCoilcoord: 192..212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..75
NoneNo IPR availablePANTHERPTHR13678:SF2VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37Acoord: 23..248
NoneNo IPR availablePANTHERPTHR13678WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATEDcoord: 23..248
IPR029012Helix hairpin bin domain superfamilyGENE3D1.10.287.660Helix hairpin bincoord: 173..250
e-value: 1.8E-8
score: 36.4
IPR009851Modifier of rudimentary, ModrPFAMPF07200Mod_rcoord: 94..240
e-value: 3.4E-17
score: 62.8
IPR009851Modifier of rudimentary, ModrPROSITEPS51314VPS37_Ccoord: 162..255
score: 13.904716
IPR037202ESCRT assembly domainSUPERFAMILY140111Endosomal sorting complex assembly domaincoord: 187..242

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:854494..855261 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6607.t1Gchil6607.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004390_pilon 854494..855261 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6607.t1 ID=Gchil6607.t1|Name=Gchil6607.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=256bp
MWTGSSGTYRTTPPTQAPSDAAHSVWSNEDAGPSSYMWDRDNNSSRFPHR
INRSSSQSTTLEMNSQYPASSRSQDLVDSVGGIPDAPRSFPELESMSLRD
LTVLHEERARFDDFVSKHQYQQQLDSIVSRERNKVEVIEREHIAVSARMH
EALDEQALEKLCENVAKLETEVSTLQKQKDEWIEHNSPERLIERLRVAIH
ESETKAEALEKSMLSSSMHFDDFVAQYIACRQKYHERMWKLEQLQMNMKK
RSFGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029012Helix_hairpin_bin_sf
IPR009851Mod_r
IPR037202ESCRT_assembly_dom