Gchil6599.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6599.t1
Unique NameGchil6599.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length143
Homology
BLAST of Gchil6599.t1 vs. uniprot
Match: A0A2V3J096_9FLOR (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J096_9FLOR)

HSP 1 Score: 218 bits (556), Expect = 5.150e-71
Identity = 111/144 (77.08%), Postives = 123/144 (85.42%), Query Frame = 0
Query:    1 MDDISPLKSAPQTSPSSLDAFKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLAVKNMYADVPMGIFVIRGENVMLLGEVDEEKEIRVGDSMKQVSEREIRRALVEGREHSDTRKA--ILEWPIPEEF 142
            MDD    K A Q+S S+L AFKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANL+LDNTVERL V NMYADVPMGIFVIRGENVMLLGEVDEEKE++VG+SM QVSE+EIR+ + +  E+    KA  +LEWPIPEEF
Sbjct:    1 MDDFMSSKPAVQSSSSNLSAFKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLVLDNTVERLTVNNMYADVPMGIFVIRGENVMLLGEVDEEKELKVGESMTQVSEKEIRKVIAKVNENGTLTKAGNVLEWPIPEEF 144          
BLAST of Gchil6599.t1 vs. uniprot
Match: R7QB24_CHOCR (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QB24_CHOCR)

HSP 1 Score: 194 bits (494), Expect = 1.310e-60
Identity = 100/133 (75.19%), Postives = 112/133 (84.21%), Query Frame = 0
Query:   12 QTSPSSLDAFKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLAVKNMYADVPMGIFVIRGENVMLLGEVDEEKEIRVGDSMKQVSEREIRRALVEGREHSDTRKA--ILEWPIPEEF 142
            +T+ S   A KLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERL V++ YADVP+GIFVIRGENVMLLGEVDEE+E+ VG SMKQV+E EIRRAL   +E    R+    +EWPIPEE+
Sbjct:   81 ETTQSGSGAIKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLTVEDSYADVPIGIFVIRGENVMLLGEVDEERELNVGSSMKQVTEPEIRRALAAIKEDRAARRRGEKVEWPIPEEY 213          
BLAST of Gchil6599.t1 vs. uniprot
Match: A0A507E1X1_9FUNG (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E1X1_9FUNG)

HSP 1 Score: 115 bits (289), Expect = 1.570e-30
Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = 0
Query:   23 LPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLAVKNMYADVPMGIFVIRGENVMLLGEVDEEKEIRVGDSMKQVSEREIRRALVEGREHSDTRK 131
            LPG+ASL + +DK +LV LRD R   GWLRS+DQ+ANL+L +TVER  V + Y DV  GIFVIRGENV+LLGE+D+EKE  +  S+K V   E+R A  + +E    R+
Sbjct:    5 LPGSASLVDCVDKKILVILRDSRKLIGWLRSYDQFANLVLQDTVERTYVGDQYGDVYRGIFVIRGENVVLLGEIDKEKETALMKSLKNVPVAEVREAQKQEQERRKIRE 113          
BLAST of Gchil6599.t1 vs. uniprot
Match: A0A293MTH1_ORNER (U6 snRNA-associated Sm-like protein LSm1 (Fragment) n=3 Tax=Ornithodoros TaxID=6937 RepID=A0A293MTH1_ORNER)

HSP 1 Score: 115 bits (288), Expect = 2.500e-30
Identity = 57/103 (55.34%), Postives = 78/103 (75.73%), Query Frame = 0
Query:   14 SPSSLDAFKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLAVKNMYADVPMGIFVIRGENVMLLGEVDEEKEIRVGDSMKQVSEREI 116
            S +++  F LPG ASL E+LDK +LV LRDGR   G+LRS DQ+ANL+L  T+ER+ V   Y D+P GIF++RGENV+LLGE+D+EKE  V  ++++VS +EI
Sbjct:    2 SHNNMTLFYLPGTASLLEELDKKLLVFLRDGRTLIGYLRSIDQFANLVLHKTIERIHVGKQYGDIPRGIFIVRGENVVLLGEIDQEKERLV--NLEEVSVQEI 102          
BLAST of Gchil6599.t1 vs. uniprot
Match: A0A1Z5L2V0_ORNMO (U6 snRNA-associated Sm-like protein LSm1 (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5L2V0_ORNMO)

HSP 1 Score: 114 bits (285), Expect = 2.880e-30
Identity = 56/103 (54.37%), Postives = 76/103 (73.79%), Query Frame = 0
Query:   14 SPSSLDAFKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLAVKNMYADVPMGIFVIRGENVMLLGEVDEEKEIRVGDSMKQVSEREI 116
            S +++  F LPG ASL E+LDK +LV LRDGR   G+LRS DQ+ANL+L  T+ER+ V   Y D+P GIF++RGENV+LLGE+DEE+E  V   +++VS  +I
Sbjct:    2 SQNNMTLFYLPGTASLLEELDKKLLVFLRDGRTLIGYLRSIDQFANLVLHRTIERIHVGKQYGDIPRGIFIVRGENVVLLGEIDEERERAV--DLEEVSVEDI 102          
BLAST of Gchil6599.t1 vs. uniprot
Match: A0A7S3GS20_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GS20_9STRA)

HSP 1 Score: 113 bits (283), Expect = 7.540e-30
Identity = 54/105 (51.43%), Postives = 78/105 (74.29%), Query Frame = 0
Query:   19 DAFKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLAVKNMYADVPMGIFVIRGENVMLLGEVDEEKEIRVGDSMKQVSEREIRRALVEG 123
            ++  LPGAASL EQ+D  +L+ LRDGRN  G LRSFDQY NLIL++T ER+  ++ Y D+P+G+F++RG+N++LLGEVDE+KE     ++++VS  E+   L  G
Sbjct:    6 ESLYLPGAASLAEQIDTKILIVLRDGRNLVGILRSFDQYVNLILEDTYERVIFQDKYCDIPLGLFLVRGDNLILLGEVDEDKE--ASQNLEKVSPAELTELLASG 108          
BLAST of Gchil6599.t1 vs. uniprot
Match: UPI000C75A328 (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C75A328)

HSP 1 Score: 114 bits (284), Expect = 8.970e-30
Identity = 52/94 (55.32%), Postives = 76/94 (80.85%), Query Frame = 0
Query:   23 LPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLAVKNMYADVPMGIFVIRGENVMLLGEVDEEKEIRVGDSMKQVSEREI 116
            LPG A+L E+LDK ++V LRDGR   G+LRS DQ+ANL++ N +ER+ VK+ Y D+P+G+FV+RGENV+LLGE++E++E++    +KQVS +EI
Sbjct:    6 LPGTATLLEELDKKLMVLLRDGRTLIGYLRSVDQFANLVIHNCIERIHVKDEYGDIPLGVFVVRGENVVLLGEIEEKEELK--GKLKQVSLKEI 97          
BLAST of Gchil6599.t1 vs. uniprot
Match: UPI00142558C8 (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142558C8)

HSP 1 Score: 113 bits (282), Expect = 1.850e-29
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 0
Query:   23 LPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLAVKNMYADVPMGIFVIRGENVMLLGEVDEEKEIRVGDSMKQVSEREI 116
            LPG ASL E+LDK +LV LRDGR   G LRS DQ+ANL+L  T+ER+ V N Y D+P G+FVIRGENV+LLGE+D EK+ +V   +K+VS  EI
Sbjct:    7 LPGTASLIEELDKKLLVLLRDGRTLIGTLRSIDQFANLVLHKTIERIHVGNKYGDIPRGVFVIRGENVVLLGEIDSEKDPKV--ELKEVSIDEI 98          
BLAST of Gchil6599.t1 vs. uniprot
Match: A0A6P7UPI0_IXOSC (U6 snRNA-associated Sm-like protein LSm1 n=4 Tax=Ixodes TaxID=6944 RepID=A0A6P7UPI0_IXOSC)

HSP 1 Score: 112 bits (281), Expect = 2.480e-29
Identity = 58/115 (50.43%), Postives = 81/115 (70.43%), Query Frame = 0
Query:   21 FKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLAVKNMYADVPMGIFVIRGENVMLLGEVDEEKEIRVGDSMKQVSER---EIRRALVEGREHSDTRKA 132
            F LPG ASL E+LDK +LV LRDGR   G+LRS DQ+ANL+L  T+ER+ V+  Y D+P GIFV+RG+NV+LLGE+DE KE  V   +++VS     E++R   E ++  + ++A
Sbjct:    4 FYLPGTASLLEELDKKLLVFLRDGRTLIGYLRSIDQFANLVLHKTIERIHVRKQYGDIPRGIFVVRGDNVVLLGEIDEAKERDV--DLEEVSVEQILEVQRLEAEAKQDQERQRA 116          
BLAST of Gchil6599.t1 vs. uniprot
Match: A0A090X7S9_IXORI (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A090X7S9_IXORI)

HSP 1 Score: 112 bits (281), Expect = 4.370e-29
Identity = 58/115 (50.43%), Postives = 81/115 (70.43%), Query Frame = 0
Query:   21 FKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLAVKNMYADVPMGIFVIRGENVMLLGEVDEEKEIRVGDSMKQVSER---EIRRALVEGREHSDTRKA 132
            F LPG ASL E+LDK +LV LRDGR   G+LRS DQ+ANL+L  T+ER+ V+  Y D+P GIFV+RG+NV+LLGE+DE KE  V   +++VS     E++R   E ++  + ++A
Sbjct:    4 FYLPGTASLLEELDKKLLVFLRDGRTLIGYLRSIDQFANLVLHKTIERIHVRKQYGDIPRGIFVVRGDNVVLLGEIDEAKERDV--DLEEVSVEQILEVQRLEAEAKQDQERQRA 116          
The following BLAST results are available for this feature:
BLAST of Gchil6599.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J096_9FLOR5.150e-7177.08U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=G... [more]
R7QB24_CHOCR1.310e-6075.19U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=C... [more]
A0A507E1X1_9FUNG1.570e-3054.13U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=P... [more]
A0A293MTH1_ORNER2.500e-3055.34U6 snRNA-associated Sm-like protein LSm1 (Fragment... [more]
A0A1Z5L2V0_ORNMO2.880e-3054.37U6 snRNA-associated Sm-like protein LSm1 (Fragment... [more]
A0A7S3GS20_9STRA7.540e-3051.43U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=S... [more]
UPI000C75A3288.970e-3055.32U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
UPI00142558C81.850e-2960.64U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=A... [more]
A0A6P7UPI0_IXOSC2.480e-2950.43U6 snRNA-associated Sm-like protein LSm1 n=4 Tax=I... [more]
A0A090X7S9_IXORI4.370e-2950.43U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=I... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 27..95
e-value: 6.6E-15
score: 65.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 29..94
e-value: 1.1E-15
score: 57.1
NoneNo IPR availableGENE3D2.30.30.100coord: 26..135
e-value: 2.4E-29
score: 103.6
NoneNo IPR availablePANTHERPTHR15588:SF8U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1coord: 22..127
IPR044642U6 snRNA-associated Sm-like protein Lsm1/8PANTHERPTHR15588LSM1coord: 22..127
IPR034104Sm-like protein Lsm1CDDcd01728LSm1coord: 23..96
e-value: 5.44727E-37
score: 119.543
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 29..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:747924..748352 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6599.t1Gchil6599.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004390_pilon 747924..748352 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6599.t1 ID=Gchil6599.t1|Name=Gchil6599.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=143bp
MDDISPLKSAPQTSPSSLDAFKLPGAASLYEQLDKLVLVCLRDGRNFFGW
LRSFDQYANLILDNTVERLAVKNMYADVPMGIFVIRGENVMLLGEVDEEK
EIRVGDSMKQVSEREIRRALVEGREHSDTRKAILEWPIPEEF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR044642PTHR15588
IPR034104Lsm1
IPR010920LSM_dom_sf