Gchil6545.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6545.t1
Unique NameGchil6545.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length333
Homology
BLAST of Gchil6545.t1 vs. uniprot
Match: A0A2V3IYD2_9FLOR (AT-rich interactive domain-containing protein cfi-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYD2_9FLOR)

HSP 1 Score: 289 bits (739), Expect = 6.370e-92
Identity = 149/230 (64.78%), Postives = 172/230 (74.78%), Query Frame = 0
Query:   47 DRVELAPGDYSGKLPVDIVNMPVVPCPLIKLGNRVIICGRYSDEQPCVKAANNLGVTMLSKTFSGRTPPHTMCREDRFLADWKAFHHEIYGLVPKLPTVSGSKLDLFLFAQQILLLGGIDTVVEKRGFVVLAKQLRLSKPCTSAATVLRRAHQSLMHQYEQKLLQIMSKPATEPYAVMSSRKEATTWDAWHGEERGP--------------------PGSPRRKVRRLSE 256
            D VELAPGDYSGKLPVDI+ MPVVPCPLIKLGNRVIICGRYSD +PCVKAAN+LGV MLS T++   PP  + R D F+ADWKAFH+E+YGLVP+LPTVSGSKLDLFLFA+Q+LLLGGIDTV+EKRGFVVLAKQL LSKPCTSAA VLRRAHQSLMHQYEQ+L+Q+ +    + Y + S  + A    A H  E  P                    P +P  K+RR+SE
Sbjct:   50 DHVELAPGDYSGKLPVDIMTMPVVPCPLIKLGNRVIICGRYSDNEPCVKAANSLGVLMLSSTYTNCKPPAAITRRDSFIADWKAFHYEMYGLVPRLPTVSGSKLDLFLFAEQVLLLGGIDTVIEKRGFVVLAKQLCLSKPCTSAAVVLRRAHQSLMHQYEQRLIQLSTATPDQTY-LHSHPRVAHQLPAEHPNEPTPTLPSFPYLPQNALHDPYHRHPTNPTNKMRRISE 278          
BLAST of Gchil6545.t1 vs. uniprot
Match: A0A2V3J2X0_9FLOR (AT-rich interactive domain-containing protein 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2X0_9FLOR)

HSP 1 Score: 140 bits (352), Expect = 3.800e-33
Identity = 75/150 (50.00%), Postives = 96/150 (64.00%), Query Frame = 0
Query:   62 VDIVNMPVVPCPLIKLGNRVIICGRYSDEQPCVKAANNLGVTMLSKTFSG-RTPPHTMCREDRFLADWKAFHHEIYGLVPKLPTVSGSKLDLFLFAQQILLLGGIDTVVEKRGFVVLAKQLRLSKPCTSAATVLRRAHQSLMHQYEQKLL 210
            VDI+++ VV  PL K G   IICGR  D  P   AA  LG  M+SK  SG +T      R   FL DWKAFH E+ G VPK P + G +LD+F  A ++LLLGG+  VV+KR F V+A+QL L K CTSAA+VL+ A++ L+  YE KL+
Sbjct:  229 VDILSLDVVDSPLQKDGRHTIICGRLPDNNPYAIAARGLGQKMVSKKHSGFQTCEVESERRLNFLKDWKAFHEELLGYVPKRPVIGGGELDIFSLAHEVLLLGGVLNVVKKRAFRVVAQQLELPKSCTSAASVLKNAYERLLFYYEGKLV 378          
BLAST of Gchil6545.t1 vs. uniprot
Match: A0A1X6PJV0_PORUM (ARID domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJV0_PORUM)

HSP 1 Score: 94.4 bits (233), Expect = 1.600e-17
Identity = 58/152 (38.16%), Postives = 81/152 (53.29%), Query Frame = 0
Query:   73 PLIKLGNRVIICGRYSDEQPCVKAANNLGVTMLSKTFSG---RTPPHTMC-----------REDRFLADWKAFHHEIYGLVPKLPTVSGSKLDLFLFAQQILLLGGIDTVVEKRGFVVLAKQLRLSKPCTSAATVLRRAHQSLMHQYEQKLL 210
            PL K G  ++I GR     P  +A +++G+  +S   SG     PP               RE  FLAD  AF  E      K+P V G  L++F    ++  LGG++ V+ KR F V+A +L L + CTSAA VLR AH+SL++ YEQKL+
Sbjct:  532 PLRKEGRNLVITGRLPTSSPYQQALDSVGIRFVSAKLSGIGPGAPPXXXXXXXXXXXGVGGREAAFLADHAAFMFERGQASFKVPVVGGGPLNIFRLFVEVCKLGGVENVLNKRAFRVVAGELDLPRTCTSAAFVLRNAHESLLYAYEQKLV 683          
The following BLAST results are available for this feature:
BLAST of Gchil6545.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IYD2_9FLOR6.370e-9264.78AT-rich interactive domain-containing protein cfi-... [more]
A0A2V3J2X0_9FLOR3.800e-3350.00AT-rich interactive domain-containing protein 2 n=... [more]
A0A1X6PJV0_PORUM1.600e-1738.16ARID domain-containing protein n=1 Tax=Porphyra um... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001606ARID DNA-binding domainSMARTSM00501bright_3coord: 119..211
e-value: 3.9E-5
score: 33.1
IPR001606ARID DNA-binding domainPFAMPF01388ARIDcoord: 121..206
e-value: 1.2E-8
score: 35.5
IPR001606ARID DNA-binding domainPROSITEPS51011ARIDcoord: 118..210
score: 14.862267
NoneNo IPR availableSMARTSM01014ARID_2coord: 115..206
e-value: 2.7E-8
score: 43.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 234..258
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 234..256
NoneNo IPR availableCDDcd16100ARIDcoord: 121..206
e-value: 3.34068E-15
score: 68.1532
IPR036431ARID DNA-binding domain superfamilyGENE3D1.10.150.60coord: 107..230
e-value: 7.8E-15
score: 56.4
IPR036431ARID DNA-binding domain superfamilySUPERFAMILY46774ARID-likecoord: 116..211

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:465193..466191 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6545.t1Gchil6545.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004390_pilon 465193..466191 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6545.t1 ID=Gchil6545.t1|Name=Gchil6545.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=333bp
MRVGCDPFASCEEIMSHLPNFSYVPNAFGEGRVEQRPADSSSSSRGDRVE
LAPGDYSGKLPVDIVNMPVVPCPLIKLGNRVIICGRYSDEQPCVKAANNL
GVTMLSKTFSGRTPPHTMCREDRFLADWKAFHHEIYGLVPKLPTVSGSKL
DLFLFAQQILLLGGIDTVVEKRGFVVLAKQLRLSKPCTSAATVLRRAHQS
LMHQYEQKLLQIMSKPATEPYAVMSSRKEATTWDAWHGEERGPPGSPRRK
VRRLSEPHAYTTSLQSAHRLECRARLSAVEPPPLLPHAWRDNFEALPRLP
PLRMLTSGLTRRANAAAKRKQGGGSGHLDDAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001606ARID_dom
IPR036431ARID_dom_sf