Gchil6538.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil6538.t1
Unique Name	Gchil6538.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	338

Homology

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BLAST of Gchil6538.t1 vs. uniprot
Match: A0A2V3J5P1_9FLOR (F-box domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5P1_9FLOR)

HSP 1 Score: 280 bits (716), Expect = 1.360e-89
Identity = 164/311 (52.73%), Postives = 188/311 (60.45%), Query Frame = 0

Query:   27 KRMRRSAQAPHTRYHVAGPGPPPXXXXXXXXXXXXXXXXXPPRRVVLPDELLVCILRFIDDATLLARLRTVCKQWCRVIDTTPAVWRTVSFRGALFARRVERRRGRRLALSPRCGLPVVQLAARAGNECAQLLKRFLFEPHTLRAVTIAQPVASALVGGAPLLQWRPFSPWPD-GVPRVDGVWLGVHAARWSDDIP---PSTHIAHAATTPXXXXXXXXXXXXXXXXXXXXXXXXXXXRAASSAARLPGGAVVGMIHVRDAVYCSRATASSAPCWLWRIDRAVRLRRAVRCAGFVGLWPMSAFLSDLVLHA 333
            KR R       TRYHVAGPGPP XXXX                   LPDE+LV I RFIDDA+LLA+LRTV  QWCRVID  P+VWR+VSFR A F+R V    G  L L  R G   V LAA AGN  A+ LK FLF+ H LRA+TIAQP AS LV G   LQ RPF PW     P +DGVW+ VHAARWSD  P   P+   +H A+                                ++A +LPGGA+VG+IHV  AV+C+ A ASSAPCW+WRIDRAVRL RAVRCAGFVGLWPMS FL+D V+ A
Sbjct:   45 KRARHRPPIAQTRYHVAGPGPPHXXXXSPTSS--------------LPDEVLVTIFRFIDDASLLAQLRTVSTQWCRVIDANPSVWRSVSFRRAAFSRSVVAH-GDALRLGARSGSATVSLAAAAGNHWARFLKHFLFDNHVLRAITIAQPCASLLVSGTQYLQSRPFPPWQGCHAPPLDGVWVAVHAARWSDAPPANPPALSPSHRASR---------------------LSHPRTPGGVATAPKLPGGALVGLIHVSGAVHCAGAAASSAPCWIWRIDRAVRLNRAVRCAGFVGLWPMSTFLTDFVVSA 319

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BLAST of Gchil6538.t1 vs. uniprot
Match: A0A7S1EQB9_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EQB9_9RHOD)

HSP 1 Score: 88.2 bits (217), Expect = 5.830e-16
Identity = 81/324 (25.00%), Postives = 130/324 (40.12%), Query Frame = 0

Query:   68 PRRVVLPDELLVCILRFIDDATLLARLRTVCKQWCRVIDTTPAVWRTVSFRGALFARRVE------------------------------RRRGRRLALSPRCGLPVVQLAARAGNECAQLLKRFLFEPHTLRAVTIAQPVASALVGGAPLL-QWRPFSPWPDGVPRVDGVWLGVHAARWSDDIPPSTHIAHAATTPXXXXXXXXXXXXXXXXXXXXXXXXXXXRAASSAARL-PGGAVVGMIHVRDAVYC--------------------------SRATASSAPCWLWRIDRAVRLRRAVRCAGFVGLWPMSAFLSDLVLHA 333
            P   +LPD++L+ +LR +     L +  +VCK++  ++ T P +WR+V F    F RRVE                              RRR R    +P+ G  V+ LAA  GN  AQLL   LF    L  VT+    A +++G      +   F   P   PR    W+ VHA      +   +   HA++                             R  + A  L P GA++G++HV + V                            S +T S    +LW+ID  +RL+R + CAG+ G+W + + ++++++ A
Sbjct:   59 PHLSLLPDDVLLHVLRRLSSIVDLLQFVSVCKRFNMLVRTAPELWRSVRFHDVRFVRRVEYVRSARSQSGDLNSVEEICTRRYNTSSGAVRRRPRMSLRNPK-GEAVLSLAADCGNRYAQLLLSVLFFNLGLNVVTLRDLDAVSILGKRSRRNETTEFFTVPYSFPRGQPAWIAVHAVG-DHSVARISSQGHASSP---------------------EDTAFLHRTRAHAETLAPRGAIIGLVHVIECVQLENGSRLATDGSNYSLFRNVDSSLSANSGSTTSGDQIYLWKIDTVLRLKRPITCAGYRGIWTIGSEMAEILVRA 359

The following BLAST results are available for this feature:

BLAST of Gchil6538.t1 vs. uniprot

BLAST of Gchil6538.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J5P1_9FLOR	1.360e-89	52.73	F-box domain-containing protein n=1 Tax=Gracilario...	[more]
A0A7S1EQB9_9RHOD	5.830e-16	25.00	Hypothetical protein n=1 Tax=Timspurckia oligopyre...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 73..114 e-value: 3.3E-4 score: 30.0
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 73..118 e-value: 5.1E-13 score: 48.7
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 67..115 score: 11.802483
None	No IPR available	GENE3D	1.20.1280.50		coord: 71..115 e-value: 1.4E-8 score: 36.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 57..118

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004390_pilon	contig	tig00004390_pilon:426472..427485 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6538.t1	Gchil6538.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004390_pilon 426472..427485 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil6538.t1 ID=Gchil6538.t1|Name=Gchil6538.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=338bp
MTPTLLLPGAPPPPRPVSPTACQPARKRMRRSAQAPHTRYHVAGPGPPPS
PPSPPSPPSPPSPPSSPPRRVVLPDELLVCILRFIDDATLLARLRTVCKQ
WCRVIDTTPAVWRTVSFRGALFARRVERRRGRRLALSPRCGLPVVQLAAR
AGNECAQLLKRFLFEPHTLRAVTIAQPVASALVGGAPLLQWRPFSPWPDG
VPRVDGVWLGVHAARWSDDIPPSTHIAHAATTPTPTMPTPTTVATVTRRA
RASTSASASSRAASSAARLPGGAVVGMIHVRDAVYCSRATASSAPCWLWR
IDRAVRLRRAVRCAGFVGLWPMSAFLSDLVLHAALAQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR036047	F-box-like_dom_sf