Gchil6506.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil6506.t1
Unique Name	Gchil6506.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	521

Homology

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BLAST of Gchil6506.t1 vs. uniprot
Match: A0A2V3IMJ8_9FLOR (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMJ8_9FLOR)

HSP 1 Score: 642 bits (1655), Expect = 4.080e-226
Identity = 336/523 (64.24%), Postives = 409/523 (78.20%), Query Frame = 0

Query:    1 MYSQSGAPPEPAPGRFENRALFQAVQHISKSLVRRVGMKYGDTVYASLFSEIWGQSQFATIEVLAKKRQEYFNRAHKLRDRSSQNV---ANSKTIQEKAPILSVEVIRDEDEKERSERMKKLNAARDRLVRILKRVKDDTLSVNERRITVQIIGRPGALDVDALRRLWGVPRVVFEAAELHQYFERYGDEKSICNFYDTHIWGAQQDTRIFNILYWKETACCDQTGGYSSLKSRRVRTISHRIIRKVIKLLLLRRRSPLFEKNMDVATEVVLYALHPDGHLVTFRESALREAGFFQGLQAYEYSRSFTASLQNLALAKLNRMLKDLRAVKQLEAELRGGDEPVEFLSLPALRRYCLERDTLTDRALHALVDRYVRREKRDMRCPDNFPVSFASFIRMYLALVGSSTDPGLKYWFSVLDQDGDGWINIGDVAHFYSERKAESEKRNGIKLAHVQFLWVRLCAMSRVPPTGKGLNLSSLKELGKEEREFMMCALLVRRADEGNLTDVAATLAESDGFSEASVELN 520
            MYSQ+ + PE  P RFENRAL  AV HIS +L++R G+K GD  YA+L S+IWGQS  ATIE+LA++R+E   R  K  + S ++V   A S T+      L  + +  +DEKER  ++KKLNAARD+LVRIL+RVKDDTL+VNERR+TV+II RPG L+VDALRRLWGVP+VVFE A+L++YF+   +E+ IC+FYD H+W  + D R+FNIL+WKE     Q+G      S   R+ISH IIRKV+KLLL +RRSPLFE+NMDVATEVVLYALHPDGH+ +FRESAL+ AGFFQGL AYEYSRSFT SLQNL LAKLNRMLKDLRAVK+LEAE    +   +  SL  L +YC ERDTLT RAL +++DRYVRRE       +N  VS A F+R+YL+L GS+TD GLKYWFSVLDQD DGWI++GDVA+FYSERKAESEKRNGIKL+ V+ LWVRLCAMSRV P GKGL+L +LKELGK+EREF+MCALL+RRAD+GNLTDVAATLAESD  S+ S+ L+
Sbjct:    1 MYSQAKSFPELHPIRFENRALLHAVSHISANLIKRAGVKSGDATYANLLSKIWGQSSVATIEILARRREECRIRKRKTPEFSKEDVRFKAKSGTVS-----LFEQTMLSDDEKERIRKLKKLNAARDKLVRILRRVKDDTLAVNERRLTVEIINRPGELNVDALRRLWGVPKVVFEVAQLYEYFKSNVEERKICDFYDKHMWSNEPDARVFNILHWKEARQRQQSGKARDRYSSCFRSISHAIIRKVVKLLLTKRRSPLFERNMDVATEVVLYALHPDGHIDSFRESALKAAGFFQGLTAYEYSRSFTGSLQNLHLAKLNRMLKDLRAVKELEAERNNHNNLADGFSLQTLLQYCSERDTLTKRALFSVIDRYVRRENESESNRENLRVSHADFVRLYLSLTGSATDTGLKYWFSVLDQDSDGWISVGDVAYFYSERKAESEKRNGIKLSDVRCLWVRLCAMSRVSPNGKGLSLQALKELGKDEREFVMCALLIRRADDGNLTDVAATLAESDDGSDGSLRLD 518

The following BLAST results are available for this feature:

BLAST of Gchil6506.t1 vs. uniprot

BLAST of Gchil6506.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IMJ8_9FLOR	4.080e-226	64.24	Serine/threonine-protein phosphatase 2A regulatory...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 61..81
None	No IPR available	COILS	Coil	Coil	coord: 116..136
None	No IPR available	GENE3D	1.10.238.10		coord: 339..493 e-value: 2.1E-14 score: 55.9
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 415..427
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 402..437 score: 9.185384
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 382..450

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004390_pilon	contig	tig00004390_pilon:260395..261957 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6506.t1	Gchil6506.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004390_pilon 260395..261957 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil6506.t1 ID=Gchil6506.t1|Name=Gchil6506.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=521bp
MYSQSGAPPEPAPGRFENRALFQAVQHISKSLVRRVGMKYGDTVYASLFS
EIWGQSQFATIEVLAKKRQEYFNRAHKLRDRSSQNVANSKTIQEKAPILS
VEVIRDEDEKERSERMKKLNAARDRLVRILKRVKDDTLSVNERRITVQII
GRPGALDVDALRRLWGVPRVVFEAAELHQYFERYGDEKSICNFYDTHIWG
AQQDTRIFNILYWKETACCDQTGGYSSLKSRRVRTISHRIIRKVIKLLLL
RRRSPLFEKNMDVATEVVLYALHPDGHLVTFRESALREAGFFQGLQAYEY
SRSFTASLQNLALAKLNRMLKDLRAVKQLEAELRGGDEPVEFLSLPALRR
YCLERDTLTDRALHALVDRYVRREKRDMRCPDNFPVSFASFIRMYLALVG
SSTDPGLKYWFSVLDQDGDGWINIGDVAHFYSERKAESEKRNGIKLAHVQ
FLWVRLCAMSRVPPTGKGLNLSSLKELGKEEREFMMCALLVRRADEGNLT
DVAATLAESDGFSEASVELN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018247	EF_Hand_1_Ca_BS
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair