Gchil6358.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil6358.t1
Unique Name	Gchil6358.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	339

Homology

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BLAST of Gchil6358.t1 vs. uniprot
Match: A0A2V3J4H0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4H0_9FLOR)

HSP 1 Score: 324 bits (830), Expect = 3.630e-108
Identity = 150/230 (65.22%), Postives = 185/230 (80.43%), Query Frame = 0

Query:  109 MSQNNIQCVKKSGEIPPENLPQEPQEFRQLQFGPASVQHMYNISAFVDTDSVISPEWETISMHSRWPNYLRLRNRFIHLRVYENVGGTETFLCAIYNGYHLASDGLGNGRTDVEIEGLNGQQLSWRACDDVGECVGGPGSTLTASHGYVDNLSDGWCVTPLERNGNAIRVTFTEVTGMYGIEIQTPDSQFEYLWSDPPQYGMTGAIDSNGFSVGGSASFTINLDGIPVPT 338
            MSQN IQCV++ GE+P EN P +P E+RQLQFG  S+ HMYN++AFVDT++VI+ +    SMH  WP+YLRLRNRFIH+R+YEN    ET+LCAIYN YHL SDG  +G  DV+IEG+ GQ LSW ACDD+GEC GGP STL+A+H + DN++DGWC++PLE NGN++RVTF+ V  M+GIEIQ+P SQFEYLW +P Q+GMTG  DSNGFSV G+ASFTIN  GIPVPT
Sbjct:    1 MSQN-IQCVRRVGEVPVENFPPQPTEYRQLQFGQPSISHMYNLTAFVDTENVITIQ---SSMHGTWPSYLRLRNRFIHIRLYENQARNETYLCAIYNAYHLPSDGKRSGSVDVQIEGIAGQNLSWVACDDLGECTGGPSSTLSATHSFDDNVTDGWCISPLESNGNSVRVTFSNVEAMFGIEIQSPGSQFEYLWGEPLQHGMTGIADSNGFSVAGTASFTINPAGIPVPT 226

[Close]

BLAST of Gchil6358.t1 vs. uniprot
Match: A0A2V3J1K3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1K3_9FLOR)

HSP 1 Score: 313 bits (802), Expect = 1.630e-103
Identity = 149/259 (57.53%), Postives = 189/259 (72.97%), Query Frame = 0

Query:   79 LCTIETCSHSTAANGSLPSALELGATVSCVMSQNNIQCVKKSGEIPPENLPQEPQEFRQLQFGPASVQHMYNISAFVDTDSVISPEWETISMHSRWPNYLRLRNRFIHLRVYENVGGTETFLCAIYNGYHLASDGLGNGRTDVEIEGLNGQQLSWRACDDVGECVGGPGSTLTASHGYVDNLSDGWCVTPLERNGNAIRVTFTEVTGMYGIEIQTPDSQFEYLWSDPPQYGMTGAIDSNGFSVGGSASFTINLDGIPVP 337
            +C+IE+CSH+ AA+GSL S+L++G+T SCV+SQN +QCV+  G++   N    P EFRQ+QFG  SV HM+N+S FVDT + +  +    S+H  WP   RL NRFIH+R+YEN    +T+LCAIYNGY +  DG   G  DVEIEGL GQ LSW ACDD  EC GGP STLTA H ++D+ +DGWCV P+E NGNAIRVTF+ V GM G+E+Q P  Q  Y W++PPQYGM GA+D++G SVGGSAS  +NL GIPVP
Sbjct:    1 MCSIESCSHNVAADGSLSSSLQIGSTASCVLSQN-VQCVRLVGDLFFNNTQSTPAEFRQVQFGQPSVSHMFNLSTFVDTGNQLRID---NSLHDAWPTETRLTNRFIHIRLYENAARNDTYLCAIYNGYTVPPDGRRRGFIDVEIEGLGGQNLSWVACDDSAECTGGPSSTLTAEHTFLDHATDGWCVGPVENNGNAIRVTFSNVEGMLGLELQAPGFQQTYRWTEPPQYGMAGAVDADGLSVGGSASLIVNLAGIPVP 255

The following BLAST results are available for this feature:

BLAST of Gchil6358.t1 vs. uniprot

BLAST of Gchil6358.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J4H0_9FLOR	3.630e-108	65.22	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
A0A2V3J1K3_9FLOR	1.630e-103	57.53	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 12..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..11
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 28..338
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 24..27
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..27
None	No IPR available	TMHMM	TMhelix		coord: 5..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000196_pilon	contig	tig00000196_pilon:256240..257256 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6358.t1	Gchil6358.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00000196_pilon 256240..257256 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil6358.t1 ID=Gchil6358.t1|Name=Gchil6358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=339bp
MMIVNFGFRTTFVSCILFSVLCIVVTAQSPAPCLYNSTHCACIQVPTPGK
CLRTVSDGTCSVEQCNEAGMTCDCNGSNLCTIETCSHSTAANGSLPSALE
LGATVSCVMSQNNIQCVKKSGEIPPENLPQEPQEFRQLQFGPASVQHMYN
ISAFVDTDSVISPEWETISMHSRWPNYLRLRNRFIHLRVYENVGGTETFL
CAIYNGYHLASDGLGNGRTDVEIEGLNGQQLSWRACDDVGECVGGPGSTL
TASHGYVDNLSDGWCVTPLERNGNAIRVTFTEVTGMYGIEIQTPDSQFEY
LWSDPPQYGMTGAIDSNGFSVGGSASFTINLDGIPVPT*