Gchil6336.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil6336.t1
Unique Name	Gchil6336.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	292

Homology

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BLAST of Gchil6336.t1 vs. uniprot
Match: A0A2V3J1P5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1P5_9FLOR)

HSP 1 Score: 296 bits (757), Expect = 5.810e-97
Identity = 150/261 (57.47%), Postives = 185/261 (70.88%), Query Frame = 0

Query:   24 VACLPVLVYTRLTRDVFLDGQTVAPKSVDYIHFPHPFSKRSQ--------LTCSLEAPFFTLDHQACENARPQAVLTDDGYIGIINTISAANLSRVSTSRRHLAIVLFHGGPTCKHSRAVLPTWVKLTRRMRASCLLAVDAAVDSMMNYNLMVVGFPTIMRASPETSATYRGDRSLQDLIAWAVKVGANAPMPAENIDHLNSDLERYELSLADIRDEHFDVLDIREEAAKQIGINWTLIAANIVTFLYFAWKLRTAHRAFS 276
            VA    L   RLT + F  G TVAPK  D+I F +  +K +         +T S ++PFFTL H+ C +ARPQA+LTD+G++GI+NT+SAANLS++S+   H+ +VLFHGGP+CK+SRA+LPTWV LTR MRASCLLA+DAA DSMMNYNLMV+GFPT+MR SPE+   Y GDRSL DLIAWAVK G  APM  E+ID L  DL RY L    + D   DVLDIRE       +NWTLI AN VT +YFA++L  AHRAF+
Sbjct:   16 VASFFALANARLTHNGFNHGHTVAPKGTDFILFSNASTKHASKEKAHPPYITPSSDSPFFTLHHEGCIHARPQALLTDEGFVGILNTVSAANLSKLSSLSDHVTLVLFHGGPSCKYSRAILPTWVNLTRYMRASCLLALDAATDSMMNYNLMVLGFPTLMRVSPESGPNYHGDRSLSDLIAWAVKSGGIAPMDVESIDDLLGDLHRYNLKFNQVVDGSIDVLDIRESKLASPPVNWTLIGANFVTVIYFAFQLNRAHRAFA 276

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BLAST of Gchil6336.t1 vs. uniprot
Match: R7QLN6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLN6_CHOCR)

HSP 1 Score: 140 bits (353), Expect = 1.070e-36
Identity = 93/261 (35.63%), Postives = 136/261 (52.11%), Query Frame = 0

Query:   21 LALVACLPVLVYTRLTRDVFLDGQTVAPKSVDYIHFPHPFSKRSQLTCSLEAPFFTLDHQACENARPQAVLTDDGYIGIINTISAANLSRVSTSRRHLA----IVLFHGGPTCKHSRAVLPTWVKLTRRMRASCLLAVDAAVDSMMNYNLMVVGFPTIMRA-SPETSATYRGDRSLQDLIAWAVKVGANAPMPAENIDHLNSDLERYELSLADIRDEHF-----DVLDIREEAAKQIGINWTLIAANIVTFL---YFAWKL 268
            L+++  LP+L ++ LT +    GQTVAP  V  +  P   S          +PF+TL    C +A    VLT+     +  T+SAA LS +            +VLFHGG +C+ SRA+ P W+++ +R R  C LA+DA  D ++NYNLM++GFPT++R  + +    +RG+R+  DL+AW  +V   APM                    D+ DE +      VLD+R        +NWTL+AANIVT L   YF WK+
Sbjct:    5 LSVLFLLPLLTHSALTHNGLPTGQTVAPPPVTLLTPPSTHS---------HSPFYTLHDHVCAHAPISRVLTELSS-NLTRTVSAAQLSAIIAXXXXXXATPLVVLFHGGASCEWSRAIFPLWLRVAKRYRTLCFLALDARSDYVLNYNLMILGFPTVLRLIADKPQEAFRGNRTEPDLVAWVARVTGVAPMRP------------------DVGDEEWLGKEQGVLDMR----PTDNLNWTLVAANIVTALNDLYFLWKI 233

The following BLAST results are available for this feature:

BLAST of Gchil6336.t1 vs. uniprot

BLAST of Gchil6336.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J1P5_9FLOR	5.810e-97	57.47	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7QLN6_CHOCR	1.070e-36	35.63	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 212..232
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 97..201 e-value: 2.5E-7 score: 32.4
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 267..291
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 247..266
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..12
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 33..246
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 13..32
None	No IPR available	CDD	cd02961	PDI_a_family	coord: 102..198 e-value: 1.84175E-9 score: 52.2277
None	No IPR available	TMHMM	TMhelix		coord: 247..266
None	No IPR available	TMHMM	TMhelix		coord: 13..35
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 100..202

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000196_pilon	contig	tig00000196_pilon:143428..144303 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6336.t1	Gchil6336.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00000196_pilon 143428..144303 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil6336.t1 ID=Gchil6336.t1|Name=Gchil6336.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=292bp
MEAPTLPVDGDNAMRRLLVSLALVACLPVLVYTRLTRDVFLDGQTVAPKS
VDYIHFPHPFSKRSQLTCSLEAPFFTLDHQACENARPQAVLTDDGYIGII
NTISAANLSRVSTSRRHLAIVLFHGGPTCKHSRAVLPTWVKLTRRMRASC
LLAVDAAVDSMMNYNLMVVGFPTIMRASPETSATYRGDRSLQDLIAWAVK
VGANAPMPAENIDHLNSDLERYELSLADIRDEHFDVLDIREEAAKQIGIN
WTLIAANIVTFLYFAWKLRTAHRAFSFIRKLCATRREQTQQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036249	Thioredoxin-like_sf