Gchil6323.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6323.t1
Unique NameGchil6323.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length290
Homology
BLAST of Gchil6323.t1 vs. uniprot
Match: A0A2V3J1D7_9FLOR (THO complex subunit 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1D7_9FLOR)

HSP 1 Score: 290 bits (741), Expect = 1.220e-94
Identity = 175/254 (68.90%), Postives = 193/254 (75.98%), Query Frame = 0
Query:    1 MLNIDRPLDDIIKESIQAKRADRADRAARRRDQ-VSKRKTPAPKARLTPAASNRSTERSPEKDTSLPAAKARRSISKKRKNRRKPNVTPAAPA-DAQTNARSEPAQTPTVADTVPHYLPPSAQRRSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSKNGRENPSKKSQPAGEDYRDRSRSPENDTFDRKESPSADRNRNGQQ 252
            M+NIDRPLDDIIKES++AKRADRA   ARRRDQ  +KRK P  K+R  P AS    ERSPEKD +LPAAK+RRSI+                  D+  +A   PA      +  PHYL  SAQRRSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRY +GTS+CEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSKN R+N  KKSQP   +YRD SRSP  + F+RK+SP ADRNRNGQQ
Sbjct:    1 MMNIDRPLDDIIKESLEAKRADRA---ARRRDQGATKRKAPNNKSR--PPASAPPKERSPEKDATLPAAKSRRSITXXXXXXXXXXXXXXXXXXDSNGSAEPAPATASAPMEPAPHYLSSSAQRRSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYPSGTSTCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSKNSRDNAPKKSQPVDAEYRDHSRSP-GEPFERKDSPFADRNRNGQQ 248          
BLAST of Gchil6323.t1 vs. uniprot
Match: R7Q9Y4_CHOCR (Similar to Aly, THO complex subunit, putative n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9Y4_CHOCR)

HSP 1 Score: 125 bits (313), Expect = 4.510e-30
Identity = 96/237 (40.51%), Postives = 120/237 (50.63%), Query Frame = 0
Query:    2 LNIDRPLDDIIKESIQAKRADRADRAARRRDQVSKRKTPAPKARLTPAASNRSTERSPEKDTSLPAAKARRSISK-----------------------KRKNRRKPNVTPAAPADAQTNARSEPAQTPT----------VADTVPHYLPPSAQRRSN--GVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVT 203
            +NIDRPLD+I+KES+ A++A R    A+R++    +KT    +     AS       P     L  AK   SISK                       +R N    N  P   A    +   +P +             VA+ +       A RR+   GVK+ VSNLHPGVT++DI ELFETVGP+K A L  + NG S+CEAEVIFE M DALEAI RYN VPLDN PL ITL T
Sbjct:    1 MNIDRPLDEIVKESVAARKAARQ---AKRKEIAQTKKTKGTDSAAVQKAS-------PVLAQKLGVAKKEGSISKXXXXXXXXXXXXXXXXXXXXXXXRRTNGNTNNARPNGNAPRPQSRNDKPFRNDKAPRSSQHQGGVANRLSTKASGQAARRATPKGVKIRVSNLHPGVTETDIGELFETVGPIKKAHLKTFANGHSACEAEVIFERMADALEAINRYNQVPLDNHPLHITLAT 227          
BLAST of Gchil6323.t1 vs. uniprot
Match: A0A7S0G117_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G117_9RHOD)

HSP 1 Score: 84.7 bits (208), Expect = 1.030e-16
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 0
Query:  123 RSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSKNG 209
            +S G K+VV NL PGV+  DI +LF+ +GP+K A++    +G S+  AEV+F +  DAL AI +YN VPLDN+PL+I+L T     G
Sbjct:   33 QSPGAKIVVGNLDPGVSNGDINDLFKGIGPIKQAMVIFNSDGKSTGSAEVVFASTDDALAAIAKYNGVPLDNRPLEISLSTNHGNEG 119          
BLAST of Gchil6323.t1 vs. uniprot
Match: A0A1X6P4P6_PORUM (RRM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P4P6_PORUM)

HSP 1 Score: 86.3 bits (212), Expect = 7.610e-16
Identity = 79/234 (33.76%), Postives = 111/234 (47.44%), Query Frame = 0
Query:    2 LNIDRPLDDIIKESIQAKRADR----------------------ADRAARRRDQVSKR---KTPAPKARLTPAASNRSTERSPEKDTSLPAAKARRSISKKRKNRRKPNVTPAAPADAQTNARSEPAQTPTVADTVPHYLPPSAQRRSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSKNGR 210
            +NIDR LDDI+KE+  ++R+ +                      A ++ RRR +  +R      A  AR++   S R+             AK   SISKK    R   ++ A  A        E  +    A         +A + + G K+VV NLH GVT  DI +LF  VG L+ A++     G S+  AEV+F    DALE+IKRYN VPLDN+PL+I+L T+ S   R
Sbjct:    4 MNIDRALDDIVKENRASRRSTKKAADGAXXXXXXXXXXXMEGTGARKSRRRRRKTGERGYAAMDAESARMSDTLSRRT-------------AKGGGSISKKGGRARGGGLSSATVAAISRAGAMEIERKAAAAAA-------NASKANAGCKIVVHNLHHGVTNGDINDLFSGVGKLQRALVIYDVRGNSTGVAEVVFARRDDALESIKRYNGVPLDNKPLRISLATSDSPTSR 217          
BLAST of Gchil6323.t1 vs. uniprot
Match: A0A0E0HYG8_ORYNI (RRM domain-containing protein n=1 Tax=Oryza nivara TaxID=4536 RepID=A0A0E0HYG8_ORYNI)

HSP 1 Score: 75.1 bits (183), Expect = 3.150e-13
Identity = 43/93 (46.24%), Postives = 57/93 (61.29%), Query Frame = 0
Query:  117 PPSAQRRS--NGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSK 207
            PP+A  RS   G K+ +SNL PGVT  D+ ELF  +G LK   +   ++G S   AEV+F    DALEAIKRY+ V LD  P++I L+   S+
Sbjct:   11 PPAAAARSLETGTKLHISNLDPGVTVDDVQELFSEIGELKRYSVNYDKDGKSQGTAEVVFARKVDALEAIKRYDGVILDGNPMKIDLIGNNSE 103          
BLAST of Gchil6323.t1 vs. uniprot
Match: A0A835LM92_9MAGN (RRM domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LM92_9MAGN)

HSP 1 Score: 78.2 bits (191), Expect = 4.030e-13
Identity = 41/79 (51.90%), Postives = 50/79 (63.29%), Query Frame = 0
Query:  126 GVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTT 204
            G K+ VSNLH GVT  DI ELF  +G LK   +   +NG SS  AEVIF    DAL A+KRYN V LD +P+ I ++ T
Sbjct:   82 GAKLYVSNLHSGVTNEDIKELFSLIGELKRYTVHYDRNGRSSGSAEVIFTRRADALAAMKRYNNVQLDGKPMNIEIIGT 160          
BLAST of Gchil6323.t1 vs. uniprot
Match: V4UVU1_CITCL (RRM domain-containing protein n=2 Tax=Citrus TaxID=2706 RepID=V4UVU1_CITCL)

HSP 1 Score: 76.6 bits (187), Expect = 4.400e-13
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 0
Query:  126 GVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSK 207
            G K+ VSNLHPGVT  DI ELF  +G LK   +   +NG  S  AEV++    DA  A+KRYN V LD +P++I +V T ++
Sbjct:   98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 179          
BLAST of Gchil6323.t1 vs. uniprot
Match: A0A7S0D067_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D067_MICPS)

HSP 1 Score: 76.6 bits (187), Expect = 1.010e-12
Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 0
Query:  128 KVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLV 202
            K+++SNLHP VT  DI ELF  VG +K A L   QNG S   AEVI     DA++AIK YN V LD +PL+I LV
Sbjct:   82 KLIISNLHPNVTNQDIKELFSQVGQVKKAGLNFDQNGRSKGTAEVILARRQDAMQAIKTYNGVKLDGRPLRIELV 156          
BLAST of Gchil6323.t1 vs. uniprot
Match: A0A067EA94_CITSI (RRM domain-containing protein n=6 Tax=Citrus TaxID=2706 RepID=A0A067EA94_CITSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.560e-12
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 0
Query:  126 GVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSK 207
            G K+ VSNLHPGVT  DI ELF  +G LK   +   +NG  S  AEV++    DA  A+KRYN V LD +P++I +V T ++
Sbjct:   98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 179          
BLAST of Gchil6323.t1 vs. uniprot
Match: A0A2H5NUB8_CITUN (RRM domain-containing protein n=3 Tax=Citrus TaxID=2706 RepID=A0A2H5NUB8_CITUN)

HSP 1 Score: 76.6 bits (187), Expect = 2.550e-12
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 0
Query:  126 GVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSK 207
            G K+ VSNLHPGVT  DI ELF  +G LK   +   +NG  S  AEV++    DA  A+KRYN V LD +P++I +V T ++
Sbjct:  132 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 213          
The following BLAST results are available for this feature:
BLAST of Gchil6323.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J1D7_9FLOR1.220e-9468.90THO complex subunit 4 n=1 Tax=Gracilariopsis chord... [more]
R7Q9Y4_CHOCR4.510e-3040.51Similar to Aly, THO complex subunit, putative n=1 ... [more]
A0A7S0G117_9RHOD1.030e-1648.28Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A1X6P4P6_PORUM7.610e-1633.76RRM domain-containing protein n=1 Tax=Porphyra umb... [more]
A0A0E0HYG8_ORYNI3.150e-1346.24RRM domain-containing protein n=1 Tax=Oryza nivara... [more]
A0A835LM92_9MAGN4.030e-1351.90RRM domain-containing protein n=1 Tax=Coptis chine... [more]
V4UVU1_CITCL4.400e-1347.56RRM domain-containing protein n=2 Tax=Citrus TaxID... [more]
A0A7S0D067_MICPS1.010e-1254.67Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A067EA94_CITSI1.560e-1247.56RRM domain-containing protein n=6 Tax=Citrus TaxID... [more]
A0A2H5NUB8_CITUN2.550e-1247.56RRM domain-containing protein n=3 Tax=Citrus TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 128..200
e-value: 2.2E-12
score: 57.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 129..195
e-value: 1.2E-11
score: 44.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 127..204
score: 11.05946
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 10..218
e-value: 1.8E-15
score: 59.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 271..289
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 209..245
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 201..289
NoneNo IPR availablePANTHERPTHR19965RNA AND EXPORT FACTOR BINDING PROTEINcoord: 5..262
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 118..230

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:112047..112916 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6323.t1Gchil6323.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000196_pilon 112047..112916 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6323.t1 ID=Gchil6323.t1|Name=Gchil6323.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=290bp
MLNIDRPLDDIIKESIQAKRADRADRAARRRDQVSKRKTPAPKARLTPAA
SNRSTERSPEKDTSLPAAKARRSISKKRKNRRKPNVTPAAPADAQTNARS
EPAQTPTVADTVPHYLPPSAQRRSNGVKVVVSNLHPGVTQSDIAELFETV
GPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQIT
LVTTRSKNGRENPSKKSQPAGEDYRDRSRSPENDTFDRKESPSADRNRNG
QQGRRNRRRNRRQIRTPGTGANQERDERDRPDGRDGYAD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf