Gchil6296.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil6296.t1
Unique NameGchil6296.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length236
Homology
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BLAST of Gchil6296.t1 vs. uniprot
Match: A0A2V3IZT8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZT8_9FLOR)

HSP 1 Score: 280 bits (717), Expect = 5.190e-93
Identity = 141/197 (71.57%), Postives = 158/197 (80.20%), Query Frame = 0 
Query:   38 RNVLRRFSTAHQPDT-SAHVIYRNPRRLRAAGMTALAVGQAGFWGTAATLAHQAPEPLISTGWGFAGFGLSAAFAALVNTYLRRNVAEIALLNGASIRVTSHSFGGMLSDPLVVEPHGLIAGPHRDSQKERYWTFGVSSSKSRRPFYFFIDTKNGILDPAAMAALVNGGEHLLVFSHKRDAQIMRNRWRQWEQTCGR 233
            R  LR +ST     T SAH+IY NPRRLRAAGMT LAVGQAGFWG A  LA QAPEPLIS+GW  AG GLSAAFAA+VN YLRRNVAEIALLNGASIRVT+HSFGGMLS P+V  PH ++ GP RD   ERYWTFGV SS S RPFY+F+DT +G+LD  A+AALVNGGEHL+ FSHKRDAQIM +RW QW+Q  G+
Sbjct:   12 RIALRSYSTPPSSSTRSAHIIYNNPRRLRAAGMTLLAVGQAGFWGMATALAQQAPEPLISSGWTVAGVGLSAAFAAMVNAYLRRNVAEIALLNGASIRVTAHSFGGMLSTPVVFTPHTIVRGPKRDDPSERYWTFGVKSS-SPRPFYYFVDTSHGVLDRHALAALVNGGEHLMAFSHKRDAQIMTSRWHQWQQISGK 207
The following BLAST results are available for this feature:
BLAST of Gchil6296.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IZT8_9FLOR5.190e-9371.57Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 99..118
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 88..98
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..65
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 66..87
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 119..235
NoneNo IPR availableTMHMMTMhelixcoord: 64..86
NoneNo IPR availableTMHMMTMhelixcoord: 96..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:7626..8333 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6296.t1Gchil6296.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000196_pilon 7626..8333 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil6296.t1 ID=Gchil6296.t1|Name=Gchil6296.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=236bp
MDSICFFFVDAIVSSLCSRTRRPPPSQVMRASAITVTRNVLRRFSTAHQP
DTSAHVIYRNPRRLRAAGMTALAVGQAGFWGTAATLAHQAPEPLISTGWG
FAGFGLSAAFAALVNTYLRRNVAEIALLNGASIRVTSHSFGGMLSDPLVV
EPHGLIAGPHRDSQKERYWTFGVSSSKSRRPFYFFIDTKNGILDPAAMAA
LVNGGEHLLVFSHKRDAQIMRNRWRQWEQTCGRNA*
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