Gchil5951.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil5951.t1
Unique Name	Gchil5951.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	484

Homology

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BLAST of Gchil5951.t1 vs. uniprot
Match: R7QI07_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QI07_CHOCR)

HSP 1 Score: 146 bits (369), Expect = 2.680e-38
Identity = 77/122 (63.11%), Postives = 90/122 (73.77%), Query Frame = 0

Query:  362 RVFGPSAVVQLSILGDNFLQDIRGLTNSLREEFSTYGHKLRHVEVKMAKGIAFIEYDTMDGVRAAVSAWANGARDVGPFQGIALNVSEKRPSYGGRRPGSMRGGRGSARGARRHRASFAPIS 483
            RVFGP+AV+QL  L    LQD R L  SLREEF+ YG K+RHV+VK  K IAFIEY+T++GVRAAV+AWANGAR  G F GI LNV+EKRP Y   RPGS RGGRG A   RR+R +  P+S
Sbjct:   44 RVFGPTAVIQLGTLSSAQLQDTRALAGSLREEFNMYGFKVRHVDVKAQKSIAFIEYETIEGVRAAVAAWANGARQEGAFAGIPLNVTEKRP-YNKWRPGSARGGRGGAXXGRRNRPASTPLS 164

[Close]

BLAST of Gchil5951.t1 vs. uniprot
Match: A0A7S1XDB3_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XDB3_9RHOD)

HSP 1 Score: 67.4 bits (163), Expect = 2.650e-8
Identity = 108/478 (22.59%), Postives = 163/478 (34.10%), Query Frame = 0

Query:   14 VAQSFVNVYYRVAEKLPERIVELYGPDSEIHHGDGLDATGPA--------IAHVARKLPLSGAATTVNKVAAQQTGASAYLVVVHGQST--KQAKTFSFTQTFVLEKQRDSHDVHFYCRNDIFTSLTDAPQP-------SQTVSSEPEPVVAETLTDTTPAXXXXXXXXXXXXPALPDTQQVEQLPTE------------VAQITSVDPDTLPPANGIMPHNQSEPQTQPSPESIIPATSDRAPPAPALVESVDTSDIDLAPQENLVVSFPNGDSTKEHKSPMSAARSVPLTKKTWASIVSSKDDVEDSTPVVSVTEQTPVVVPELVKQ-----------LPEPVPAEVEQKPITQSNTRQEXXXXXXXXXXXXXXXXXXXXXXXXXXRVFGPSAVVQLSILGDNFLQDIRGLTNSLREEFSTYGHKLRHVEVKMAKGIAFIEYDTMDGVRAAVSAWANGARDVGPFQGIALNVSEKR 451
            V   FV+ YY V  K+PE +   Y P+SE+    G +             I  +    P     + ++ +  Q     A L+VV G     +  +   FTQTF+L +Q       ++CRND+   L     P       S + +SE  P    + +   P             P   D  +                    +Q    + D +      +    S PQT+     +  A   +  P P       T+++        +VS P   S   H          P   K+WAS+ S    V+                P+L K+           +   + A   +     S T                             +  GPS  V +S L      D   L  SL+EEFS YG  +  ++V++AKG AFI+ D+ + V  AV AW NG    GPF    LNV  +R
Sbjct:   18 VGNMFVSKYYDVLCKMPEHLYRFYNPESELSFSMGSEDNSERCTVRGTSNIQSLIASRPKLCLGSKLSTIDCQVAHDDAVLIVVTGTMIMPEHDRPKYFTQTFLLCRQPGG----YFCRNDVLRFLEPPSAPVAQPAPDSSSSASEANPPQELSSSXQAPXSSEAEKSEEEVKPTATDEAEAPXXXXXXXXXXXXXXXXGASQTRDPEGDPVQHVEETITVRDSTPQTE-----VTGAPEPKEEPRP-------TAEVPK------IVSPPASSSQTNHVPQQQPIEETPGQTKSWASLFSKNGKVQP---------------PKLQKEQAIENTGHHPGMSNGISAATSESESGDSQTTSRREIERPMSETIGNT------------QTVGPS--VWVSALPTTM--DGPNLEASLKEEFSKYG-TVSSLDVRLAKGFAFIDMDSWENVNVAVDAWKNGPPTSGPFSNCKLNVQVRR 441

The following BLAST results are available for this feature:

BLAST of Gchil5951.t1 vs. uniprot

BLAST of Gchil5951.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
R7QI07_CHOCR	2.680e-38	63.11	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]
A0A7S1XDB3_9RHOD	2.650e-8	22.59	Hypothetical protein n=1 Tax=Compsopogon caeruleus...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002075	Nuclear transport factor 2 domain	PFAM	PF02136	NTF2	coord: 14..126 e-value: 5.8E-9 score: 36.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 386..479 e-value: 8.4E-8 score: 34.3
None	No IPR available	GENE3D	3.10.450.50		coord: 4..131 e-value: 1.3E-19 score: 72.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 318..360
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 450..483
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 324..347
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..172
None	No IPR available	PANTHER	PTHR10693:SF20	AT27578P	coord: 4..472
IPR039539	Ras GTPase-activating protein-binding protein	PANTHER	PTHR10693	RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN	coord: 4..472
IPR018222	Nuclear transport factor 2, eukaryote	PROSITE	PS50177	NTF2_DOMAIN	coord: 14..128 score: 15.22143
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 7..126
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 389..476

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025225_pilon	contig	tig00025225_pilon:425333..426784 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5951.t1	Gchil5951.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00025225_pilon 425333..426784 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil5951.t1 ID=Gchil5951.t1|Name=Gchil5951.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=484bp
MGAAPKQPPSAARVAQSFVNVYYRVAEKLPERIVELYGPDSEIHHGDGLD
ATGPAIAHVARKLPLSGAATTVNKVAAQQTGASAYLVVVHGQSTKQAKTF
SFTQTFVLEKQRDSHDVHFYCRNDIFTSLTDAPQPSQTVSSEPEPVVAET
LTDTTPATPSEPPKPSSPPPALPDTQQVEQLPTEVAQITSVDPDTLPPAN
GIMPHNQSEPQTQPSPESIIPATSDRAPPAPALVESVDTSDIDLAPQENL
VVSFPNGDSTKEHKSPMSAARSVPLTKKTWASIVSSKDDVEDSTPVVSVT
EQTPVVVPELVKQLPEPVPAEVEQKPITQSNTRQENVQSANRAPHQHSGH
QHSGHPYRGYPRVFGPSAVVQLSILGDNFLQDIRGLTNSLREEFSTYGHK
LRHVEVKMAKGIAFIEYDTMDGVRAAVSAWANGARDVGPFQGIALNVSEK
RPSYGGRRPGSMRGGRGSARGARRHRASFAPIS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002075	NTF2_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR039539	Ras_GTPase_bind_prot
IPR018222	Nuclear_transport_factor_2_euk
IPR032710	NTF2-like_dom_sf
IPR035979	RBD_domain_sf