Gchil5920.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5920.t1
Unique NameGchil5920.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length154
Homology
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BLAST of Gchil5920.t1 vs. uniprot
Match: A0A2V3IPI9_9FLOR (Mediator of RNA polymerase II transcription subunit 9 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPI9_9FLOR)

HSP 1 Score: 190 bits (483), Expect = 1.180e-59
Identity = 95/149 (63.76%), Postives = 122/149 (81.88%), Query Frame = 0 
Query:    1 MATNEHRAEVTEKELGFVKQFRFMDIVANALQEVQEGADETSITSTMRKLQAKFAACDATLKALPGGNLTRRNQVAEIKRLKENLDSKEYLLQQLYSKHDLISRFLAQRAIPEGGPVDGVDADLVFPPQQDNEELPMVIEDEAMMGLGL 149
            M T E + E++EKEL F++ FRFMDIVA ALQEV +GADET+IT+T+ KL+ KF +CDA LKALPGG++TR +Q+ E+K LKENL++K++LL QLYSKHDLISR LAQRAIPEG PVDGV+++LVFPP+   E +  V +D+ MMGL L
Sbjct:    1 MTTKEQKLELSEKELEFIRSFRFMDIVARALQEVHDGADETTITATLSKLEEKFLSCDAALKALPGGSMTRHHQMTEVKSLKENLENKQFLLGQLYSKHDLISRVLAQRAIPEGRPVDGVNSELVFPPEPA-EGMVGVADDDPMMGLEL 148
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BLAST of Gchil5920.t1 vs. uniprot
Match: R7QFU9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFU9_CHOCR)

HSP 1 Score: 51.6 bits (122), Expect = 9.600e-6
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 0 
Query:   61 LKALPGGNLTRRNQVAEIKRLKENLDSKEYLLQQLYSKHDLISRFLAQRAIPEGGPVDGVDADLVFPPQQDNEELPMVIEDE 142
            L  LPGG LTR  QV EI RL E L+ K  L++Q Y++HDL++R LAQ+ +        ++ D     ++ NEE   V+ DE
Sbjct:    2 LDRLPGGCLTRAEQVREIARLHEELERKRKLVRQ-YAEHDLVARVLAQKPVAPQKEEMAMEDDGA---EEANEEAEDVMIDE 79
The following BLAST results are available for this feature:
BLAST of Gchil5920.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IPI9_9FLOR1.180e-5963.76Mediator of RNA polymerase II transcription subuni... [more]
R7QFU9_CHOCR9.600e-641.46Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 78..98
IPR011425Mediator of RNA polymerase II transcription subunit 9PFAMPF07544Med9coord: 23..96
e-value: 3.6E-7
score: 30.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025225_piloncontigtig00025225_pilon:172546..173007 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5920.t1Gchil5920.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00025225_pilon 172546..173007 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5920.t1 ID=Gchil5920.t1|Name=Gchil5920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=154bp
MATNEHRAEVTEKELGFVKQFRFMDIVANALQEVQEGADETSITSTMRKL
QAKFAACDATLKALPGGNLTRRNQVAEIKRLKENLDSKEYLLQQLYSKHD
LISRFLAQRAIPEGGPVDGVDADLVFPPQQDNEELPMVIEDEAMMGLGLG
GVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011425Med9