Gchil5794.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5794.t1
Unique NameGchil5794.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length185
Homology
BLAST of Gchil5794.t1 vs. uniprot
Match: A0A2V3IFB2_9FLOR (Protein LSM12-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFB2_9FLOR)

HSP 1 Score: 266 bits (681), Expect = 8.340e-89
Identity = 130/184 (70.65%), Postives = 149/184 (80.98%), Query Frame = 0
Query:    1 MDARPQPGMKLEVGAPIAVHLTDGALLRGFVHAEDRAAGLLCLELIPSAQVALVALANVKSTAPFEHPVDSRKWPSNFDLDLAKLRIDERRAYEKCEVEFNQLGVGVSPSAQAIFDVLANTMPCRWDGKDILILDSVRLAPPYTVKAISTEGSGDARVVDRVKMILNREAHRITSASDANGVKP 184
            MDARPQPGMK EVG PIA+ L DG+ LRGFVHAED+ A LLCLELIPSA+VALV++ N+KS +P     D+RKWPSNF +DLAKLR +ERR  EK E EFN+LGVGVSPSAQAIFD LA TMPC+WDG+DILILD+VRLAPPY  K +S    GD  VV+RVKMIL  EAH I +A+DANGVKP
Sbjct:    1 MDARPQPGMKFEVGKPIAIQLNDGSFLRGFVHAEDKGAALLCLELIPSAKVALVSIVNIKSASPLTQIADTRKWPSNFHIDLAKLRAEERRICEKREAEFNKLGVGVSPSAQAIFDTLAKTMPCKWDGEDILILDTVRLAPPYNAKCLS----GDTGVVERVKMILENEAHSIRNATDANGVKP 180          
BLAST of Gchil5794.t1 vs. uniprot
Match: R7QH47_CHOCR (LSM12 homolog n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QH47_CHOCR)

HSP 1 Score: 182 bits (462), Expect = 9.970e-56
Identity = 85/174 (48.85%), Postives = 114/174 (65.52%), Query Frame = 0
Query:    9 MKLEVGAPIAVHLTDGALLRGFVHAEDRAAGLLCLELIPSAQVALVALANVKSTAPFEHPVDSRKWPSNFDLDLAKLRIDERRAYEKCEVEFNQLGVGVSPSAQAIFDVLANTMPCRWDGKDILILDSVRLAPPYTVKAISTEGSGDARVVDRVKMILNREAHRITSASDANGV 182
            M  EVG P++V L DG  L+GFVHAED AAGL+CLELIPSA + L+ ++NVKS  P     DSRKWP+N D+DL +L+ ++ R + K  +EF  +GVGV+P  QA+FDVLA T+PC W+G  I++  +VRL PPY +K+I            RV+M+L R       A + NGV
Sbjct:    1 MAFEVGKPLSVQLVDGTALKGFVHAEDAAAGLVCLELIPSADLTLLPISNVKSATPIPDLADSRKWPANLDVDLPRLKAEQERIFRKRHIEFTHIGVGVTPEGQAVFDVLAKTLPCEWEGNVIVVFGTVRLGPPYDIKSI------------RVRMVLERRTRTPRPAEETNGV 162          
BLAST of Gchil5794.t1 vs. uniprot
Match: I0Z869_COCSC (AD domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z869_COCSC)

HSP 1 Score: 97.8 bits (242), Expect = 2.350e-22
Identity = 63/183 (34.43%), Postives = 99/183 (54.10%), Query Frame = 0
Query:    1 MDARPQPGMKLEVGAPIAVHLTDGALLRGFVHAEDRAAGLLCLELI-PSAQVALVALANVKSTAPFEHPVDSRKWPSNF------DLDLAKLRIDERRAYEKCEVEFNQLGVGVSPSAQAIFDVLANTMPCRWDGKDILILDSVRLAPPYTVKAIS-TEGSGDARVVDRVKMILNREAHRITS 175
            M+A+ +P  +  VG+ I +    G +++G V A+DR  G  C+ L  P+   A   L  +K    F   V S K P ++       +D++K    E +A +  E E  + G+GV+  AQ IFD L+ TMPC+W GK I++L  V +  PY + ++S T     A +V+RVK +L+ E  R+TS
Sbjct:    1 MNAQQEPDHQYSVGSSIVLETLIGEVVKGEVFAQDR--GTKCIILREPTEGAAKCNLRVLKED--FIKKVVSSKIPKDYVVAKLPHVDISKCLDREAKAVQAAEFEAARKGLGVTEEAQRIFDALSKTMPCKWQGKTIVVLGEVSIKEPYDLASVSSTHPDNGAAIVERVKKVLDAERKRMTS 179          
BLAST of Gchil5794.t1 vs. uniprot
Match: A0A2V0NSF4_9CHLO (AD domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NSF4_9CHLO)

HSP 1 Score: 89.0 bits (219), Expect = 7.210e-19
Identity = 54/175 (30.86%), Postives = 94/175 (53.71%), Query Frame = 0
Query:    8 GMKLEVGAPIAVHLTDGALLRGFVHAEDRAAGLLCLELIPSA----QVALVALANVK---STAPFEHPVDSRKWPSNFDLDLAKLRIDERRAYEKCEVEFNQLGVGVSPSAQAIFDVLANTMPCRWDGKDILILDSVRLAPPYTVKAISTEG--SGDARVVDRVKMILNREAHRI 173
            G +  +G  + +  T    + G V A D A   L L+   +      + L A A +K   S  P  HP +   +  N D + A+LR  E +A ++ E +  ++GVGV+  AQ+IFD L+ T+PC W G+DI++++SV + PPY  ++ +  G  +G+   ++R++ +L  E  R+
Sbjct:   13 GSQWAIGCKVTIRTTFDEEVTGTVFAYDAATDSLVLQQAGTHGGVNNLRLYAKAAIKELVSAEPPSHPPEL--FLPNVDRERARLR--EEKALKQAEADLAKVGVGVTREAQSIFDALSKTLPCAWRGRDIIVMESVVVPPPYNPESCAARGGGAGEGGALERIRRVLTAERSRL 183          
BLAST of Gchil5794.t1 vs. uniprot
Match: A0A7J7IJ24_9RHOD (Protein with role in RNA processing n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJ24_9RHOD)

HSP 1 Score: 84.7 bits (208), Expect = 4.840e-17
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 0
Query:   80 LDLAKLRIDERRAYEKCEVEFNQLGVGVSPSAQAIFDVLANTMPCRWDGKDILILDSVRLAPPYTVKAISTEGSGDARVVDRVKMILNREAHR 172
            LDL  LR  E R+ ++ +    +LG GVS  AQ +FD L  T+PC W+G +I++LDSV +APPYTV A+     GD     RV ++L RE  R
Sbjct:  103 LDLESLRHREARSIQRAQERLEKLGRGVSAHAQLVFDALDKTLPCHWEGPNIVVLDSVCVAPPYTVDAVRAI-DGDQAAAQRVCLVLERELSR 194          
BLAST of Gchil5794.t1 vs. uniprot
Match: A0A2P6U0H0_CHLSO (LSM12-like protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U0H0_CHLSO)

HSP 1 Score: 82.8 bits (203), Expect = 1.180e-16
Identity = 42/97 (43.30%), Postives = 57/97 (58.76%), Query Frame = 0
Query:   80 LDLAKLRIDERRAYEKCEVEFNQLGVGVSPSAQAIFDVLANTMPCRWDGKDILILDSVRLAPPYTVKAISTEGSGDARVVDRVKMILNREAHRITSA 176
            +DL + R  E +A    E E  ++GVGV+  AQ IFD LA T+PCRWDG+ I++LD + ++PPY      T   GD     RVK +L  E  R+ SA
Sbjct:   77 VDLQRCREREDKAVRAAEAEAAKIGVGVTRQAQVIFDALAKTLPCRWDGERIVVLDEIVVSPPYET---CTSLHGDDAAAARVKKVLEAERQRLQSA 170          
BLAST of Gchil5794.t1 vs. uniprot
Match: A0A7S3U8Z2_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3U8Z2_9CHLO)

HSP 1 Score: 82.4 bits (202), Expect = 2.080e-16
Identity = 54/169 (31.95%), Postives = 80/169 (47.34%), Query Frame = 0
Query:   11 LEVGAPIAVHLTDGALLRGFVHAEDRAAGLLCLELIPSAQ------VALVALANVKSTAPFEHPVDSRKWPSNFDLDLAKLRIDERRAYEKCEVEFNQLGVGVSPSAQAIFDVLANTMPCRWDGKDILILDSVRLAPPYTVKAISTEGSGDARVVDRVKMILNREAHRI 173
            LEVG    V L     L+G V A     G  C+ L+   +      V ++    V   A +E PV          +   + R    +A    E E  ++G GV+P AQAIFD L+ TMPC+W+GK I++LD+V++  PY  +  +     D   + RVK +L  E  R+
Sbjct:   11 LEVGGQADVMLKGNVRLKGEVFAVPEP-GARCVVLLQKGKENAKHTVRIINEDVVTKVAKYEPPVQGASARELPHVCPERTRKRLEKALRDAEAEAARIGQGVTPEAQAIFDALSKTMPCKWEGKAIVVLDAVKIEEPYKPENCTLVDEEDDAALGRVKKVLEGERARL 178          
BLAST of Gchil5794.t1 vs. uniprot
Match: C1MT91_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MT91_MICPC)

HSP 1 Score: 81.6 bits (200), Expect = 3.510e-16
Identity = 52/171 (30.41%), Postives = 89/171 (52.05%), Query Frame = 0
Query:   13 VGAPIAVHLTDGALLRGFVHAEDRAAGLLCL----ELIPSAQVALV---ALANVKSTAPFEHPVDSRKWPSNFDLDLAKLRIDERRAYEKCEVEFNQLGVGVSPSAQAIFDVLANTMPCRWDGKDILILDSVRLAPPYTVKAISTEGSGDARVVDRVKMILNREAHRITSA 176
            +G  ++     G    G V   D   GL  L    +++ +  V ++    ++++KST P + P    K P    +D A+ +  E  A +   +    +GV V+  AQ IFD LA T+PCRW+G+ I++LD V+++PPY  + +    +GD R V+RV+ +L  E  ++  A
Sbjct:    8 IGHVVSGVTATGEKFAGEVFTFDEGTGLAVLRAKGDIVNTHDVRILRAEGVSDLKSTPPSDPP-KMEKLPV---VDEARCQKREEAAVKAATISAANIGVDVTAEAQDIFDALARTLPCRWEGRSIVVLDEVKISPPYA-ECVGV-ATGDPRAVERVQKVLAMEKSKLVKA 172          
BLAST of Gchil5794.t1 vs. uniprot
Match: A0A2T9Z4Q4_9FUNG (AD domain-containing protein n=2 Tax=Harpellales TaxID=61421 RepID=A0A2T9Z4Q4_9FUNG)

HSP 1 Score: 83.2 bits (204), Expect = 1.300e-15
Identity = 42/122 (34.43%), Postives = 68/122 (55.74%), Query Frame = 0
Query:   61 STAPFEHPVDSRKWPSNFDLDLAKLRIDERRAYEKCEVEFNQLGVGVSPSAQAIFDVLANTMPCRWDGKDILILDSVRLAPPYTVKAISTEGSGDARVVDRVKMILNREAHRITSASDANGV 182
            S++ F + +     P+   L + KL++   +A E  + +  ++GVGV+  AQ IFD L+ T+PCRW G  I +LD V + PPY +    +  S  A  +DR+K +L+ E  R+ S  D N +
Sbjct:  227 SSSNFINSLSKLSLPTPKALPIEKLKLAHNKALENAKAQSLRIGVGVTKEAQNIFDALSKTLPCRWVGDKIAVLDEVIIEPPYGILNCRSAASA-AATLDRIKKVLHGEKQRLASLEDINKI 347          
BLAST of Gchil5794.t1 vs. uniprot
Match: A0A7S0RLT3_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RLT3_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 1.580e-14
Identity = 53/167 (31.74%), Postives = 84/167 (50.30%), Query Frame = 0
Query:   13 VGAPIAVHLTDGALLRGFVHAEDRAAGLLCLELIPSAQVALVALANVKSTAPFEHPVDSRKWPSNFDL------DLAKLRIDERRAYEKCEVEFNQLGVGVSPSAQAIFDVLANTMPCRWDGKDILILDSVRLAPPYTVKAISTEGSGDARVVDRVKMILNREAHRI 173
            VG  + +  T G  +   V   D+A  +L L     A   +  L  +K++   +    ++  P   DL      D+ K +  E +A ++ E E   +GVGV+  AQ+IF+ L  T+PC W+GKDI++LD V +  PYT     T+    A  ++RVKM+L  E  R+
Sbjct:   10 VGDSVVLRTTLGEEISSTVFGYDKATNMLMLR-ETGAHNGVANLRLLKASFIEKVVSLTKAAPGTVDLGPLPPVDMEKGKRREAKALKQAEKEAALVGVGVTKEAQSIFESLRKTLPCHWEGKDIVVLDEVVIKEPYTPNDCWTDAKHQA-TLNRVKMVLAAERTRL 174          
The following BLAST results are available for this feature:
BLAST of Gchil5794.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IFB2_9FLOR8.340e-8970.65Protein LSM12-like n=1 Tax=Gracilariopsis chorda T... [more]
R7QH47_CHOCR9.970e-5648.85LSM12 homolog n=1 Tax=Chondrus crispus TaxID=2769 ... [more]
I0Z869_COCSC2.350e-2234.43AD domain-containing protein n=1 Tax=Coccomyxa sub... [more]
A0A2V0NSF4_9CHLO7.210e-1930.86AD domain-containing protein n=1 Tax=Raphidocelis ... [more]
A0A7J7IJ24_9RHOD4.840e-1745.16Protein with role in RNA processing n=1 Tax=Cyanid... [more]
A0A2P6U0H0_CHLSO1.180e-1643.30LSM12-like protein n=1 Tax=Chlorella sorokiniana T... [more]
A0A7S3U8Z2_9CHLO2.080e-1631.95Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
C1MT91_MICPC3.510e-1630.41Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A2T9Z4Q4_9FUNG1.300e-1534.43AD domain-containing protein n=2 Tax=Harpellales T... [more]
A0A7S0RLT3_9CHLO1.580e-1431.74Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019181Anticodon-binding domainSMARTSM00995AD_2coord: 76..165
e-value: 2.5E-17
score: 73.6
IPR019181Anticodon-binding domainPFAMPF09793ADcoord: 80..164
e-value: 5.4E-20
score: 71.3
IPR039683Protein Lsm12-likePANTHERPTHR13542LSM12 HOMOLOGcoord: 7..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004449_piloncontigtig00004449_pilon:213918..214713 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5794.t1Gchil5794.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004449_pilon 213918..214713 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5794.t1 ID=Gchil5794.t1|Name=Gchil5794.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=185bp
MDARPQPGMKLEVGAPIAVHLTDGALLRGFVHAEDRAAGLLCLELIPSAQ
VALVALANVKSTAPFEHPVDSRKWPSNFDLDLAKLRIDERRAYEKCEVEF
NQLGVGVSPSAQAIFDVLANTMPCRWDGKDILILDSVRLAPPYTVKAIST
EGSGDARVVDRVKMILNREAHRITSASDANGVKP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019181Anticodon-binding_dom
IPR039683Lsm12-like