Gchil5784.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil5784.t1
Unique Name	Gchil5784.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	862

Homology

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BLAST of Gchil5784.t1 vs. uniprot
Match: A0A2V3IFA2_9FLOR (Cell surface glycoprotein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFA2_9FLOR)

HSP 1 Score: 300 bits (768), Expect = 6.920e-87
Identity = 169/385 (43.90%), Postives = 227/385 (58.96%), Query Frame = 0

Query:  498 TLHIHDGPGHERHSSQLASRREEP-QHLLANGNAAEDKLSEGITTPCGRDDGYQEDHITPLRDGLDGRFFQNANKLRECDTIADVSLEPPP--TR--------DWPSGSPRPFISPLTAEKPAKCHSLSLDSAPQAEATESNHKI-QPHIAPGT-------FTVCLSDFDNEEQYDLVFEIITQMGGEPLEHMRQTRPNCLITPLDPKTGAIKSRKMAVHLALAFRVPIVGIYWLLQSFKAGRWIPPEDYDASSTYHKGATGIFRGLIATIDALFLDPDVSDAVIQFREDIERMVTGAGGVIVDSEQLVNQVQGNP--QFTLHVHIVKDIDEERYYTSPELPPEKLEAVRCMQDKIPMKVVNMNWISECLFSGQFPPPKRPNSET 861
            T H    P   R + Q  +  E+P  H  A  +AA+DKLSEG T P GRDD   ED +TPL+               +  T      EPPP  TR        +W +       SPLT  KP +         PQ   T    K  QP   P         F V +SDF +++QYDLVFE++TQMGGEPL ++  TRPNCLITPL P TGAI++RKMAV LA+A RVPIVG+ WL   F AG W+P + YDASS++H+ ++G+F+G+IATID  F  PD SD ++QFR DI+R++T A GV+V  + +   ++ NP  +F LH+H+VKD +E+ +  SP++  +KL+ +R  Q      +VNMNWISECLF+GQ PPP+R  + T
Sbjct:  293 TNHSPQQPHPTRTARQPVATPEKPLPHTPAQNDAADDKLSEGTTNPGGRDDADMEDPVTPLQ----------PTSTAKPRTPTQTPPEPPPNATRQLKHSNKSEWKTTQSHLITSPLTTLKPKQ--------QPQCLQTPIALKTNQPSSKPDNMRTHSPAFFVYMSDFTDQQQYDLVFELVTQMGGEPLPNLASTRPNCLITPLHPTTGAIQTRKMAVLLAIALRVPIVGLTWLFDCFNAGTWLPLQPYDASSSFHRTSSGVFKGVIATIDHDFEQPDASDKLLQFRNDIKRLITSADGVVVQLDYIKEHLKTNPDSEFFLHIHVVKDQNEDEFVMSPQVADDKLDLIRKHQSPNGFTIVNMNWISECLFTGQCPPPERSETVT 659

The following BLAST results are available for this feature:

BLAST of Gchil5784.t1 vs. uniprot

BLAST of Gchil5784.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IFA2_9FLOR	6.920e-87	43.90	Cell surface glycoprotein 1 n=1 Tax=Gracilariopsis...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036420	BRCT domain superfamily	GENE3D	3.40.50.10190	BRCT domain	coord: 625..738 e-value: 4.5E-10 score: 41.4
IPR036420	BRCT domain superfamily	SUPERFAMILY	52113	BRCT domain	coord: 697..853
IPR036420	BRCT domain superfamily	SUPERFAMILY	52113	BRCT domain	coord: 641..737
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 452..482
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 432..451
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 320..364
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 264..298
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..250
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 432..555
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..376
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 502..517
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..203
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..694
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 715..861
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 695..714
None	No IPR available	CDD	cd00027	BRCT	coord: 640..716 e-value: 4.65319E-4 score: 37.3413
IPR001357	BRCT domain	PROSITE	PS50172	BRCT	coord: 640..730 score: 12.44936
IPR001357	BRCT domain	PROSITE	PS50172	BRCT	coord: 737..846 score: 10.66888

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004449_pilon	contig	tig00004449_pilon:103652..106237 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5784.t1	Gchil5784.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004449_pilon 103652..106237 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil5784.t1 ID=Gchil5784.t1|Name=Gchil5784.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=862bp
MERVLSAAHVVADSLGPLRVCGSCRHPLRPLFCVSCRRAFCRCHTPAHAA
CRLVAHEYQVARLVDAVNSICDWASLSRFNLAHQLPSPPCALTLRLRPPP
PSVWLTVRVRPPHQPYPPLSASQNRLPSPGPGESAVQPHSRPSVPQTTTP
SHHPQPQQCQTQLGRPLEPQKCPPQQHQVTARLRIREQRFPRRTKRHRQP
SRRLQRSTQTQTNTPIPSQHQHQTPQNVSTPSSSRTNARIVTEKPISQQT
TQPPPELPLHLPSSAANTRLQTSTEPLPHRSRASSQPDNVQQLDAHATPN
AREKQPDPPVQSAPECASENISRGEHDSAETPARNVPETDEQNPKRVTKR
LPSTRESFERRGITPPLKKRRHIHHTSPATITKVLKTSTRLKVSHDVPTL
AQHKKYSEKVGDVVEQPAPSVTVSLGNVEQPFASSSIDSKENMTLSVNQE
EEPGLDDSHSGDLPVGDFENDADKDKSSTSKTDSLSKADVCEQNIGSTLH
IHDGPGHERHSSQLASRREEPQHLLANGNAAEDKLSEGITTPCGRDDGYQ
EDHITPLRDGLDGRFFQNANKLRECDTIADVSLEPPPTRDWPSGSPRPFI
SPLTAEKPAKCHSLSLDSAPQAEATESNHKIQPHIAPGTFTVCLSDFDNE
EQYDLVFEIITQMGGEPLEHMRQTRPNCLITPLDPKTGAIKSRKMAVHLA
LAFRVPIVGIYWLLQSFKAGRWIPPEDYDASSTYHKGATGIFRGLIATID
ALFLDPDVSDAVIQFREDIERMVTGAGGVIVDSEQLVNQVQGNPQFTLHV
HIVKDIDEERYYTSPELPPEKLEAVRCMQDKIPMKVVNMNWISECLFSGQ
FPPPKRPNSET*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036420	BRCT_dom_sf
IPR001357	BRCT_dom