Gchil5777.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil5777.t1
Unique Name	Gchil5777.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	747

Homology

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BLAST of Gchil5777.t1 vs. uniprot
Match: A0A2V3J6S6_9FLOR (Nuclear pore complex protein NUP88 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6S6_9FLOR)

HSP 1 Score: 821 bits (2121), Expect = 1.360e-289
Identity = 441/752 (58.64%), Postives = 559/752 (74.34%), Query Frame = 0

Query:    1 MLPLRTHLRSQRVPPDNDSALIHPPRILPSLSPTHAAVVADNIMQM--IPLNQRAMPRY--TTLPFSPLYELVSGPYTALVSSRRVAVLHQHSGVCYQVGTTLFETRPALRILHVQWLPSAPAFLMLLTSDYCLRVFDAISAEAAAIERQRIQVVTAGAPPVSFVCASGVGWHALAVYVLAEDGSVYVAAPIAPIATRISLDQFRKLRRSAKAVLSAHSSETPSSPNTSRRLSFGDPQMPWALRQARLQLVFLDSVFEQSGNEMVAVREFKPAPLLFQGPLHIQKDHNGEQFTQLVRITTTKQPVLLRVSESGNVYVLVAMEQVEANWFLSSQPAGEGLLLASKEYASCAQSVAPAFLCFERIAFESAVSLTPVAS--HADTFFFATATAVYSLTFSFLSLLQDALALERCPTSTLRELFTVHNPDGSSHSSIRAIMSHYVRGDGPVAIVLLADGTFHVTDPLRWHSLQVDLPTLLPDRPFSESQQNLRAHGFRELAENVVHALRHVESLRDQFGRVADGTLGKVSTITSFASTLPYLEKRVEVLTGNNQQPGIGDSLGNVASLLLEWTHAISDRSESNASDINKLKAVLADSDRSEQELRLKLNHVAERTESLKGRVKTVFEHLEMGSAQLSKLELERLAILRQKKRRLSAFRARTAELAAAIQSKSQRLLFNENDASGNRSLFTNSESTRSWRDPAPFSGRLQSKRSQKRVELGSKEMHQIKIALEKHSDQISEAMELSSSLWKRLSVTT 746
            M  LRTHLR+ R   +++ A+ + PRILP+LSP H  V   +  Q+  +PL++ +  R    T PF   + +VSGPY AL S R VAV H  SG  Y V   LF  RPAL +LH QWLPSAPAFL+LLTSD CLRVFD +S EAA   RQR+ VVTAG+ PVSFVC +G GWHAL VYVLAEDG++YVAAP+API T I+L +FR+LR +A  VL  H++++P   +  RRLSFGD  +PW++RQARLQL FLD+VFEQ+  +M+AVREFKPAPLLFQGPLH++ +   E+ TQL+ ++T+  PVLLRVSE G V VL+AME+ +A WFLSSQP  +GLLLAS++YA CA+SVAPA LCFE+  F++ V+L PVAS  +ADT+F AT +AVYSLT SFLSLL D LALER P STLR+LFTV  P  SS   I    SHYVRGDGPVAI+ L+DGTFH TDPLRWH++  D+P LLP     ES  + RA+  + LAE+VVHALRHVE+LR Q GRVADGTLG VS++ S ASTL +LEKRV VLTG + QPGIGDSLGNVA+LLL+WT  +S R++++ S +++L+  +++ DRSE+EL+ KL    E  + LK RV+TVFE +E GS QLSK E+ERLA LRQKKRR++AFR RT ELAAAI+ +++RL     +       F+++   +SWRD +PF+ R +    Q+ +E GSKE+ QIK+ALEKHS+QIS+AMELSSSLWKRLS+TT
Sbjct:    1 MQALRTHLRALRAVCESEEAVNNTPRILPALSPAHITVPDPDARQLHQLPLSKLSTARSIRATRPFR--HAIVSGPYLALYSDRSVAVHHVPSGRSYPVAEALFRDRPALSVLHAQWLPSAPAFLVLLTSDCCLRVFDVVSPEAAETARQRVHVVTAGSAPVSFVCGAGSGWHALCVYVLAEDGALYVAAPLAPIGTTINLAEFRQLRDAAMFVLEQHAADSPQQKDMKRRLSFGDSDLPWSVRQARLQLRFLDTVFEQNAQQMIAVREFKPAPLLFQGPLHVENEVPTEKCTQLLLLSTSSHPVLLRVSEHGRVSVLLAMERFDAQWFLSSQPMEQGLLLASEQYADCARSVAPALLCFEQFVFDAPVALVPVASLSYADTYFLATRSAVYSLTLSFLSLLDDELALERSPRSTLRQLFTVKTPGDSSALRISGFTSHYVRGDGPVAILHLSDGTFHTTDPLRWHTVYHDVPNLLPLNLLVESHSSSRAYACKSLAESVVHALRHVENLRGQNGRVADGTLGTVSSLQSLASTLAFLEKRVIVLTGGDDQPGIGDSLGNVATLLLQWTDELSQRAKNDISKVSELQQAISEGDRSEEELQAKLKRAQEGADQLKSRVRTVFEAIERGSLQLSKAEVERLATLRQKKRRIAAFRTRTVELAAAIRKRNERLANMLREVRQKEDWFSSTSGVQSWRDSSPFARRRERPAEQRALEFGSKELQQIKVALEKHSEQISDAMELSSSLWKRLSITT 750

The following BLAST results are available for this feature:

BLAST of Gchil5777.t1 vs. uniprot

BLAST of Gchil5777.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J6S6_9FLOR	1.360e-289	58.64	Nuclear pore complex protein NUP88 n=1 Tax=Gracila...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037700	Nucleoporin NUP88/NUP82	PANTHER	PTHR13257	NUCLEOPORIN NUP84-RELATED	coord: 90..731

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000015_pilon	contig	tig00000015_pilon:1559220..1561460 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5777.t1	Gchil5777.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00000015_pilon 1559220..1561460 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil5777.t1 ID=Gchil5777.t1|Name=Gchil5777.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=747bp
MLPLRTHLRSQRVPPDNDSALIHPPRILPSLSPTHAAVVADNIMQMIPLN
QRAMPRYTTLPFSPLYELVSGPYTALVSSRRVAVLHQHSGVCYQVGTTLF
ETRPALRILHVQWLPSAPAFLMLLTSDYCLRVFDAISAEAAAIERQRIQV
VTAGAPPVSFVCASGVGWHALAVYVLAEDGSVYVAAPIAPIATRISLDQF
RKLRRSAKAVLSAHSSETPSSPNTSRRLSFGDPQMPWALRQARLQLVFLD
SVFEQSGNEMVAVREFKPAPLLFQGPLHIQKDHNGEQFTQLVRITTTKQP
VLLRVSESGNVYVLVAMEQVEANWFLSSQPAGEGLLLASKEYASCAQSVA
PAFLCFERIAFESAVSLTPVASHADTFFFATATAVYSLTFSFLSLLQDAL
ALERCPTSTLRELFTVHNPDGSSHSSIRAIMSHYVRGDGPVAIVLLADGT
FHVTDPLRWHSLQVDLPTLLPDRPFSESQQNLRAHGFRELAENVVHALRH
VESLRDQFGRVADGTLGKVSTITSFASTLPYLEKRVEVLTGNNQQPGIGD
SLGNVASLLLEWTHAISDRSESNASDINKLKAVLADSDRSEQELRLKLNH
VAERTESLKGRVKTVFEHLEMGSAQLSKLELERLAILRQKKRRLSAFRAR
TAELAAAIQSKSQRLLFNENDASGNRSLFTNSESTRSWRDPAPFSGRLQS
KRSQKRVELGSKEMHQIKIALEKHSDQISEAMELSSSLWKRLSVTT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR037700	NUP88/NUP82