Gchil5774.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5774.t1
Unique NameGchil5774.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length925
Homology
BLAST of Gchil5774.t1 vs. uniprot
Match: A0A2V3IU22_9FLOR (C3H1-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IU22_9FLOR)

HSP 1 Score: 687 bits (1773), Expect = 1.950e-232
Identity = 459/934 (49.14%), Postives = 579/934 (61.99%), Query Frame = 0
Query:    7 MRTAAAIGDSDFVDLDDPNDFMQVRQSPSFETPTYWNNNINPPASQLPPPLPHLQHAHHFYDVGITSA-HQPQPLAMPVAQSLQIPQLHHVSQPPVLHQRNALLQHGXXXXXXXXXXXXXXXXLHDPPPGLMTVXXXXXXXXXXXXXXXXXXXXXXXXXHPFMHIPQPPAPPLHH-------------------LPQQAIHPAILQRPRAPLVPRPSYGPNPVLHRQSLPMTRRIPSHHIHRRPPAXXXXXXXXXXXXXXXXXLPSADTXXXXXXXXXXXXXXRKKPSLAELRRRALQGMRRTSSITPNASSSSLPAVGFTSFSLPTLSKHGAADSQIIFEFSSSDEESDDEILPGRSREMPESPIATRKKAIEDMKIRVVRLGQCPSMLTRSSDQKTFSEQRPEGSPSVALLPSTKSPSPVPPSTPALSLKPGDPSSLIPVNSVENDASDSILQRSGTPPGVQAKGQTPTSKAKMEEIVQLRRQIQQIEHRIAQQKAGRQRIEQGVDSQLLSKKPPSPLTDAPANPLKRFASSLKSHGTRTDSEKRRRYYTDAQRNKAPISSAIPSVSDSSSPLVSPSGATESTSSSISDQASKPALWKENSVQKSALPNHTDAANTRLIDDLRTELEESKKKLDSERDANRLLQAADVSVAEAFAKLSFKRSRLKSVQDEMRRVQTDLVTAEEEYKATISAAQRVKASLGVDVSENKYAAQDVCAAATEHSTTSQDVNLNNQEFSPGMESPDAQQLIRYNPYPLKLGLALKEQGESNERESEMCFQSDPILRPSPYTPSPTVMYNSVLTGLKAYILRIPKYAKATDRRSFSPLSLSWSNKLNPEKALCPQELRGQCSNRKCIYQHLRHPINRNVHALNVIDIIQKYITEDTWKSAERNVVAAKLAIYEGKNQNVDDIVFHLISFLCPASSKLPLAPITQAHD 920
            MR  A I D +F+DLDDP DFM V   PSF    YWN  + P   QLP   P L   H F+DVG+    H  Q LA+P+  S+Q+PQ H +S PP   Q N L  H                 +H   P +M VX                                PP  P+H+                     Q+ +H  ++Q  RAPL+PRP+Y    V H      + R+PS  +  R P XXXXXXXXXX         S   XXXXXXXXXX    RKKPSLAELRRRAL GM RT+   P+ S+SS+   G ++ S+P+L      D+ IIFEFS+SDEES+DE +P  S     S    RK+AIEDMKIRVVRLGQCPSMLT+ ++ + F+E R +G  S    P  ++PS   P+ P+LS K  D  S+  + S +NDA  S LQ      G Q K Q PT  AK ++I  LRRQI+++E RIAQQK+ +Q  E     + L+    SPL ++  + LKR A S K H  R + EKRRRYY+D QR+  P   A+P VS S SP  S   ATESTSSS+S    +P+LWKENSV+K   P   D A+TRLI+DLR ELEESKK LDSERDANRL+QAADVSVAEA+AKL FKRSRL+SVQ E+++ QTD+VTAEEEY+ T++AAQRV+ASLG D  +N Y + D+ +   E  + + D++ +N  FS  +++ + +Q   Y   P+KL    KE     E E +  +QSD +LRPSPYTPSPT +Y SVLTGLKA+ILRIP +AKA+DR++FSPLSL+W+ KL+P KALCPQELRGQCSNRKCIYQHLR P+N  +HA+NVID +Q++I   TW SAER +VAAKLAIYEGKNQ+VDDIV +LISFLCP SSK+P AP+ Q  D
Sbjct:    1 MRAMAPIEDGEFIDLDDPKDFMPVNPPPSFNNRPYWNTGVAPAPPQLPQVAPQLPPGHRFFDVGMAPPPHPAQALAIPMQHSMQVPQPHGISPPPTFAQGNILSMH---------PRASPMHSMHPSAPDIMRVX--------------------------------PPQLPMHNPXXXXXXXXXXXXXXXXXXXXQRPLHTPMMQXXRAPLIPRPTYESTSVQHMPPPSHSHRMPSRILRSRTPXXXXXXXXXXXSESPQLHPESPXXXXXXXXXXXX----RKKPSLAELRRRALAGMPRTN---PSMSNSSILIPGSSASSIPSLPNQAPGDA-IIFEFSTSDEESEDERIPSPSVGNVNSTATDRKRAIEDMKIRVVRLGQCPSMLTKDTNTRAFAE-RGDGIQSSGYPPLKRTPSLSLPAMPSLSAKASDNVSIASLTSGDNDALQS-LQTLSILTGHQGKWQPPTPAAKRDKIALLRRQIKEMEQRIAQQKSDQQTGEHQARPKSLT----SPLPNSSLSILKRSAESTKPHSGRHEPEKRRRYYSDIQRSSLPAHDAVPPVSPSVSPCRSAPDATESTSSSVSAAIPEPSLWKENSVRKLGSPVQVDTADTRLINDLRLELEESKKALDSERDANRLIQAADVSVAEAYAKLGFKRSRLRSVQHELKKAQTDIVTAEEEYRTTVAAAQRVRASLGEDP-DNTYPSIDIPSMPAEQVSGTPDISAHN--FSSDLDADNVKQPAGYQISPIKLTSNSKEGNGREEDEEKARYQSDLVLRPSPYTPSPTDVYTSVLTGLKAFILRIPNHAKASDRQNFSPLSLTWARKLDPNKALCPQELRGQCSNRKCIYQHLRLPLNPTLHAINVIDSLQQFIPTQTWLSAERKIVAAKLAIYEGKNQSVDDIVLNLISFLCPVSSKIPFAPLIQPKD 876          
BLAST of Gchil5774.t1 vs. uniprot
Match: R7QHZ4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHZ4_CHOCR)

HSP 1 Score: 173 bits (439), Expect = 6.930e-41
Identity = 121/346 (34.97%), Postives = 191/346 (55.20%), Query Frame = 0
Query:  579 ASKPALWKENSVQKSALPNHTDAANTRLIDDLRTELEESKKKLDSERDANRLLQAADVSVAEAFAKLSFKRSRLKSVQDEMRRVQTDLVTAEEEYKATISAAQRVKASLGVDVSENKYAAQDVCAAATEHSTTSQDVNLNNQEFSPGMESPDAQQLIRYNPYPLKLGLALKEQGESNERES--------EMCFQSDPILRPSPYTPSPTVMYNSVLTGLKAYILRIPKYAKATDRRSFSPLSLSWSNKLNPEKALCPQELRGQ--CSNRKCIYQHLRHPINRNVHALNVIDIIQKYITEDTWKSAERNVVAAKLAIYEGKNQNVDDIVFHLISFLCPASS--KLPL 912
            A++   W     + S      D     L+DDL+ EL  SKK+L S  D  +L+ A+DVS+A+A AKLSFKR+ L ++ D M+R + +++ AE++ +   +AA+R++ SL      + +   ++     E   T           SPG              Y L    +  + G   + E+        +   ++D +L+ SPY+PS    + S L+GL+AY+LR P +++A DR+S SPLSL+W++ L+P K +CP+ELR Q  C+++KC Y+HLR+  +   HAL+V D +Q +  + + + AE+ VV AKL IY   N+NVD+ V  LI+ L P  S  KLPL
Sbjct:  563 AAEQGRWNRRDDEDSEAVFDEDYEEPGLVDDLKLELASSKKQLASVTDYVQLVNASDVSLAQASAKLSFKRAALSNLSDLMKRAEFEVLDAEQDLEKITNAARRMRESLVDGPFADMFPMPEIARTGGEGRGTGA---------SPG-------------GYDLSSATSQSDGGVPTDAENGDKVADGLDALTRTDLVLQASPYSPSSGFFFLSCLSGLRAYVLRTPYHSRAADRKSTSPLSLTWTHNLDPMKTICPKELRRQYSCASKKCQYEHLRNFESMKGHALDVTDRLQGF-ADMSKEDAEKQVVRAKLDIYS--NKNVDNTVSFLITSLFPIPSPDKLPL 883          
The following BLAST results are available for this feature:
BLAST of Gchil5774.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IU22_9FLOR1.950e-23249.14C3H1-type domain-containing protein n=1 Tax=Gracil... [more]
R7QHZ4_CHOCR6.930e-4134.97Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 607..634
NoneNo IPR availableCOILSCoilCoilcoord: 652..672
NoneNo IPR availableCOILSCoilCoilcoord: 458..485
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 373..402
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 319..357
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..272
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 336..357
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 542..600
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 426..461
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..296
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 480..600
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 370..465
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 525..540
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 488..502
IPR019607Putative zinc-finger domainPFAMPF10650zf-C3H1coord: 825..845
e-value: 1.5E-4
score: 21.4
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 820..846
score: 8.915515

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:1551715..1554848 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5774.t1Gchil5774.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000015_pilon 1551715..1554848 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5774.t1 ID=Gchil5774.t1|Name=Gchil5774.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=925bp
MTLIPSMRTAAAIGDSDFVDLDDPNDFMQVRQSPSFETPTYWNNNINPPA
SQLPPPLPHLQHAHHFYDVGITSAHQPQPLAMPVAQSLQIPQLHHVSQPP
VLHQRNALLQHGNLLQQGNTLLQQGNTLLHDPPPGLMTVHAPPPDVLSVH
HGQPNVLPIHAAQPHPFMHIPQPPAPPLHHLPQQAIHPAILQRPRAPLVP
RPSYGPNPVLHRQSLPMTRRIPSHHIHRRPPAPSPPPPPPPPPPPPPPPL
PSADTPPPQHSPPTSPPPPRKKPSLAELRRRALQGMRRTSSITPNASSSS
LPAVGFTSFSLPTLSKHGAADSQIIFEFSSSDEESDDEILPGRSREMPES
PIATRKKAIEDMKIRVVRLGQCPSMLTRSSDQKTFSEQRPEGSPSVALLP
STKSPSPVPPSTPALSLKPGDPSSLIPVNSVENDASDSILQRSGTPPGVQ
AKGQTPTSKAKMEEIVQLRRQIQQIEHRIAQQKAGRQRIEQGVDSQLLSK
KPPSPLTDAPANPLKRFASSLKSHGTRTDSEKRRRYYTDAQRNKAPISSA
IPSVSDSSSPLVSPSGATESTSSSISDQASKPALWKENSVQKSALPNHTD
AANTRLIDDLRTELEESKKKLDSERDANRLLQAADVSVAEAFAKLSFKRS
RLKSVQDEMRRVQTDLVTAEEEYKATISAAQRVKASLGVDVSENKYAAQD
VCAAATEHSTTSQDVNLNNQEFSPGMESPDAQQLIRYNPYPLKLGLALKE
QGESNERESEMCFQSDPILRPSPYTPSPTVMYNSVLTGLKAYILRIPKYA
KATDRRSFSPLSLSWSNKLNPEKALCPQELRGQCSNRKCIYQHLRHPINR
NVHALNVIDIIQKYITEDTWKSAERNVVAAKLAIYEGKNQNVDDIVFHLI
SFLCPASSKLPLAPITQAHDNRQT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019607Putative_zinc-finger_domain
IPR000571Znf_CCCH