Gchil5627.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil5627.t1
Unique Name	Gchil5627.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	258

Homology

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BLAST of Gchil5627.t1 vs. uniprot
Match: A0A2V3J3N6_9FLOR (RNA-binding motif protein, X-linked 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3N6_9FLOR)

HSP 1 Score: 268 bits (684), Expect = 7.450e-87
Identity = 135/180 (75.00%), Postives = 157/180 (87.22%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLTSDAIWVGGLSPAITEDRLLSVLEQYGTILHVNLVRDASTSESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMPEDGGMDTTPDGFHEA--QEFSKEHISEALAEESAAEKRRQTAVMERLQALRKKRRILSPSKTEK 178
            MNKV  INNLNQTELEQGIAGTTASWHHKYL+SDAI++GGLSP+ITE++LL++LEQYGT+ H+NLVRDA TSESKGYAF RYADPRSCVLAVDNFTG EI+GRNLRVDHVENYRMPEDGGMDTTPDGF E+  Q+   EH       E+AAE+RRQ AVMERL+ALRK+RR+ + ++ E+
Sbjct:    1 MNKVTAINNLNQTELEQGIAGTTASWHHKYLSSDAIYIGGLSPSITENKLLAILEQYGTVRHINLVRDAVTSESKGYAFVRYADPRSCVLAVDNFTGVEIEGRNLRVDHVENYRMPEDGGMDTTPDGFLESHQQDLDVEHTIAPSPVENAAERRRQAAVMERLEALRKRRRLEASTQDER 180

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BLAST of Gchil5627.t1 vs. uniprot
Match: R7QRZ0_CHOCR (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRZ0_CHOCR)

HSP 1 Score: 163 bits (413), Expect = 7.960e-46
Identity = 90/182 (49.45%), Postives = 120/182 (65.93%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLTSDAIWVGGLSPAITEDRLLSVLEQYGTILHVNLVRDASTSESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMPEDGG---MDTTP-----------DGFHEAQEFSKEHISEALAEESAAEKRRQTAVMERLQALRKKR 168
            M KV  I  LN+TELE+GIAGT+ASWH KY +   I+VGGL  A+TE  LL++ EQ+G ++ VNLVR+A T +S+G+AF +Y DPRS VLAVDNFTG E+ GR LRVDH E++++P + G   +DTTP            G     E +   I+  + +E+  E RR+ AV ER QA+ KKR
Sbjct:    1 MKKVEAIRKLNETELEEGIAGTSASWHQKYESCPFIYVGGLPTALTEGDLLAMFEQFGIVVLVNLVREADTGKSRGFAFLKYHDPRSAVLAVDNFTGTEVGGRTLRVDHAEDFKIPNEPGRGIIDTTPPQLRAEDSSRPSGRPATNESNANEITAVVKKETEKEDRRERAVFERWQAMNKKR 182

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BLAST of Gchil5627.t1 vs. uniprot
Match: B7FS26_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FS26_PHATC)

HSP 1 Score: 137 bits (344), Expect = 2.360e-37
Identity = 64/116 (55.17%), Postives = 86/116 (74.14%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLTSDAIWVGGLSPAITEDRLLSVLEQYGTILHVNLVRDASTSESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN +  I  +N+ EL++G+AGT ASWH +Y  S  ++VG L  A+TE  ++ VL QYG I  ++LVR+  T +S+G+AF +Y D RSCVLAVDNFTG E+ GR+LRVDHVENYR+P
Sbjct:    1 MNTIKEILRINEEELKRGLAGTAASWHQQYAQSAWVYVGNLDHALTEGDVICVLSQYGEIEDLHLVREEDTGKSRGFAFCKYEDARSCVLAVDNFTGIELCGRSLRVDHVENYRLP 116

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BLAST of Gchil5627.t1 vs. uniprot
Match: K0SHL3_THAOC (RRM domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SHL3_THAOC)

HSP 1 Score: 134 bits (336), Expect = 7.100e-35
Identity = 65/116 (56.03%), Postives = 80/116 (68.97%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLTSDAIWVGGLSPAITEDRLLSVLEQYGTILHVNLVRDASTSESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN VN I  +N  ELEQG+  T  SWH KY  S  ++ G L  A+TE  +L +L QYG I  VNLVRD  T +S+G+AF +Y D RSCVLAVDNFTG ++ GR LRVDHVE Y++P
Sbjct:    1 MNVVNEITRINDLELEQGLTHTAGSWHGKYRDSAWVYAGNLPHALTEGDVLCILSQYGEIEDVNLVRDDDTGKSRGFAFVKYEDARSCVLAVDNFTGAQVLGRTLRVDHVERYKLP 116

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BLAST of Gchil5627.t1 vs. uniprot
Match: A0A7S4J9N7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J9N7_9STRA)

HSP 1 Score: 130 bits (328), Expect = 4.870e-34
Identity = 61/116 (52.59%), Postives = 82/116 (70.69%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLTSDAIWVGGLSPAITEDRLLSVLEQYGTILHVNLVRDASTSESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN +  I  +N+ E+E+GI GT ASWH KY  S  ++VG L   +TE  +L ++ Q+G I  +NLVRD  T +SKG+AF +Y D RSCVLAVDNF G ++ GR++RVDHVE YR+P
Sbjct:    1 MNVIAEIQRINEVEIERGIVGTPASWHAKYSESAWVYVGNLPHRLTEGDVLCIMSQFGEIEDINLVRDDDTGKSKGFAFVKYEDARSCVLAVDNFCGVKVLGRSIRVDHVEKYRLP 116

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BLAST of Gchil5627.t1 vs. uniprot
Match: A0A448ZMV0_9STRA (RRM domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZMV0_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.150e-32
Identity = 58/116 (50.00%), Postives = 84/116 (72.41%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLTSDAIWVGGLSPAITEDRLLSVLEQYGTILHVNLVRDASTSESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN +  I  +NQ EL++GIAGT+ASWH ++  S  ++VG L   +TE  +L V+ QYG +  ++LVR+  T +S+G+AF +Y D RSC+LAVDNF G ++ GR++RVDHVE YR+P
Sbjct:    1 MNTIREIEKINQQELDRGIAGTSASWHSQFANSAWVYVGNLDHQLTEGDVLCVMSQYGEVEDIHLVREEDTGKSRGFAFLKYEDSRSCILAVDNFCGMKVLGRSIRVDHVEQYRLP 116

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BLAST of Gchil5627.t1 vs. uniprot
Match: B8CCB6_THAPS (RRM domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCB6_THAPS)

HSP 1 Score: 125 bits (314), Expect = 1.170e-32
Identity = 63/116 (54.31%), Postives = 78/116 (67.24%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLTSDAIWVGGLSPAITEDRLLSVLEQYGTILHVNLVRDASTSESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN VN I  +N  ELE+G+  T+ASWH KY  S  I  G L   +TE  +L +L QYG I  ++LVRD  + +SKG+AF +Y D RSCVLAVDN  G  + GR LRVDHVENYR+P
Sbjct:    1 MNVVNEIQRINDLELEKGLTHTSASWHDKYKDSAWIHAGNLPLNLTEGDVLCILSQYGEIDDIHLVRDKDSGKSKGFAFVKYEDARSCVLAVDNLCGSMVLGRTLRVDHVENYRLP 116

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BLAST of Gchil5627.t1 vs. uniprot
Match: A0A1Z5KI60_FISSO (RNA-binding motif protein, X-linked 2 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KI60_FISSO)

HSP 1 Score: 126 bits (317), Expect = 2.860e-32
Identity = 62/147 (42.18%), Postives = 89/147 (60.54%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLTSDAIWVGGLSPAITEDRLLSVLEQYGTILHVNLVRDASTSESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP------EDGGMDTTPDGFHEAQEFSKEHISE 141
            MN +  I  +N  ELE+G+AGT  SWH ++  +  ++VG L   +TE  +L +L QYG I   +L+RD  T +SKG+ F +Y DP+SC+LAVDN  G +I  R LR+DHVENYR+P      E G     P   +E Q+ + ++  E
Sbjct:    1 MNTIREIEKINAQELERGLAGTAGSWHSQFAHAPWVYVGNLDHQLTEGDILCILSQYGEIEDAHLIRDEETGKSKGFGFVKYEDPKSCILAVDNLIGVKILDRPLRIDHVENYRLPKHLEEKEKGNQLAAPGHAYEGQQLANQYTLE 147

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BLAST of Gchil5627.t1 vs. uniprot
Match: A0A1Z5JH77_FISSO (RNA-binding motif protein, X-linked 2 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JH77_FISSO)

HSP 1 Score: 124 bits (310), Expect = 3.540e-32
Identity = 56/116 (48.28%), Postives = 78/116 (67.24%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLTSDAIWVGGLSPAITEDRLLSVLEQYGTILHVNLVRDASTSESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMP 116
            MN +  I  +N  ELE+G+AGT  SWH ++  +  ++VG L   +TE  +L +L QYG I   +L+RD  T +SKG+ F +Y DP+SC+LAVDN  G +I  R LR+DHVENYR+P
Sbjct:    1 MNTIREIEKINAQELERGLAGTAGSWHSQFAHAPWVYVGNLDHQLTEGDILCILSQYGEIEDAHLIRDEETGKSKGFGFVKYEDPQSCILAVDNLIGVKILDRPLRIDHVENYRLP 116

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BLAST of Gchil5627.t1 vs. uniprot
Match: A0A835YJH4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.040e-31
Identity = 61/118 (51.69%), Postives = 83/118 (70.34%), Query Frame = 0

Query:    1 MNKVNVINNLNQTELEQGIAGTTASWHHKYLTSDAIWVGGLSPAITEDRLLSVLEQYGTILHVNLVRDASTSESKGYAFARYADPRSCVLAVDNFTGFEIDGRNLRVDHVENYRMPED 118
            MN V  I  +N+ EL++G+ G+ ASWHHKY  S  ++VGGL   +TE  ++ VL Q+G I  +NLVRD  T +SKG+AF +Y D RS +LAVDN  G ++ GR LRVDHVE YR+P++
Sbjct:    1 MNVVREIQKINERELKEGLTGS-ASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKE 117

The following BLAST results are available for this feature:

BLAST of Gchil5627.t1 vs. uniprot

BLAST of Gchil5627.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3J3N6_9FLOR	7.450e-87	75.00	RNA-binding motif protein, X-linked 2 n=1 Tax=Grac...	[more]
R7QRZ0_CHOCR	7.960e-46	49.45	RRM domain-containing protein n=1 Tax=Chondrus cri...	[more]
B7FS26_PHATC	2.360e-37	55.17	Predicted protein (Fragment) n=1 Tax=Phaeodactylum...	[more]
K0SHL3_THAOC	7.100e-35	56.03	RRM domain-containing protein n=1 Tax=Thalassiosir...	[more]
A0A7S4J9N7_9STRA	4.870e-34	52.59	Hypothetical protein (Fragment) n=1 Tax=Odontella ...	[more]
A0A448ZMV0_9STRA	1.150e-32	50.00	RRM domain-containing protein n=1 Tax=Pseudo-nitzs...	[more]
B8CCB6_THAPS	1.170e-32	54.31	RRM domain-containing protein (Fragment) n=1 Tax=T...	[more]
A0A1Z5KI60_FISSO	2.860e-32	42.18	RNA-binding motif protein, X-linked 2 n=1 Tax=Fist...	[more]
A0A1Z5JH77_FISSO	3.540e-32	48.28	RNA-binding motif protein, X-linked 2 n=1 Tax=Fist...	[more]
A0A835YJH4_9STRA	1.040e-31	51.69	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 226..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..257
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 232..246
None	No IPR available	PANTHER	PTHR45880	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..252
None	No IPR available	PANTHER	PTHR45880:SF1	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..252
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 35..108 e-value: 1.0E-19 score: 81.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 36..106 e-value: 3.4E-15 score: 55.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 34..112 score: 16.585409
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 6..123 e-value: 5.1E-21 score: 77.0
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 19..117

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000015_pilon	contig	tig00000015_pilon:86957..87730 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5627.t1	Gchil5627.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00000015_pilon 86957..87730 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil5627.t1 ID=Gchil5627.t1|Name=Gchil5627.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=258bp
MNKVNVINNLNQTELEQGIAGTTASWHHKYLTSDAIWVGGLSPAITEDRL
LSVLEQYGTILHVNLVRDASTSESKGYAFARYADPRSCVLAVDNFTGFEI
DGRNLRVDHVENYRMPEDGGMDTTPDGFHEAQEFSKEHISEALAEESAAE
KRRQTAVMERLQALRKKRRILSPSKTEKPPSNRAKPANRDEEIEQTTPRG
GTNFEKTDHATHATVTDSYPTEKEKRRREKDKRRSERARIRRLRAERRAR
RDQTSHE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf