Gchil5542.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5542.t1
Unique NameGchil5542.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length228
Homology
BLAST of Gchil5542.t1 vs. uniprot
Match: A0A2V3J6V5_9FLOR (Transcription elongation factor TFIIS n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6V5_9FLOR)

HSP 1 Score: 321 bits (822), Expect = 8.060e-109
Identity = 173/228 (75.88%), Postives = 188/228 (82.46%), Query Frame = 0
Query:    1 MADLNKKLSATKTIDKKAKVSTPRKHLPAEDXXXXXXXXXXXXXKSVGDT-EACKEYDVKHPTGDKMRDKVRILLSDALFNKDEHIVKSKDQAQIVAYAIEHAMFVKFDGNGTSYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKKRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 227
            MAD+ KKLSATKTIDKK +  T  K L +  XXXXX         SV    +   +YDVKHPTGDKMRDKVR LL+DALF KDE  V SKD AQ+VA AIEHAMF+KFDGNG SYKQKYRS+SFNLKDPKNGKLRS VL R I P EL+DMSST+LAND+LRK+RAEV+EKMTRDAMPYTQQ ASTDRFKCGKCK+RKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF
Sbjct:    1 MADVKKKLSATKTIDKKTRPPTTPKILSSAXXXXXXPLDVSPSTVSVPPPPDHDSQYDVKHPTGDKMRDKVRSLLADALFKKDEKHVSSKDDAQLVANAIEHAMFIKFDGNGQSYKQKYRSISFNLKDPKNGKLRSLVLTRQINPQELLDMSSTELANDELRKRRAEVQEKMTRDAMPYTQQAASTDRFKCGKCKQRKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 228          
BLAST of Gchil5542.t1 vs. uniprot
Match: R7QEZ4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEZ4_CHOCR)

HSP 1 Score: 266 bits (681), Expect = 2.730e-87
Identity = 138/230 (60.00%), Postives = 167/230 (72.61%), Query Frame = 0
Query:    4 LNKKLSATKTIDKKAKVSTPRKHLPAEDXXXXXXXXXXXXXKS------VGDTEACKEYDVKHPTGDKMRDKVRILLSDALFNKDEHIVKSKDQAQIVAYAIEHAMFVKFDGNGTSYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKKRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 227
            L KKLSA+K I+KKA+      H+  +              K          +E   EYDV HPT +K+RDK+R LL+DALF KDE  VK ++ AQIVA AIE A++ K DGNG  YK KYR++SFN+KDPKN KLR A+L R + PSEL++MS+ DLAND+LRK R EVR KMTRDAMP+++QEASTD FKCGKCK+RKCTYYQMQTRSADEPLTTFV+CV+C NRWRF
Sbjct:    5 LEKKLSASKVINKKARSGDVSPHVSRDALKADAAAAATGERKDDSTQNETNSSEFDAEYDVPHPTNEKIRDKIRSLLTDALFKKDEDFVKDRNDAQIVANAIEAALYDKMDGNGAPYKNKYRNISFNIKDPKNAKLRMALLYRHLPPSELLNMSNHDLANDELRKNREEVRAKMTRDAMPFSKQEASTDMFKCGKCKQRKCTYYQMQTRSADEPLTTFVSCVHCGNRWRF 234          
BLAST of Gchil5542.t1 vs. uniprot
Match: C1NA42_MICPC (Transcription elongation factor n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1NA42_MICPC)

HSP 1 Score: 169 bits (427), Expect = 9.470e-48
Identity = 88/168 (52.38%), Postives = 117/168 (69.64%), Query Frame = 0
Query:   63 GDKMRDKVRILLSDAL---FNKDEHIVKSKDQAQIVAYAIEHAMFVKFDGNGTSYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKKRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 227
            GD +RD+ R LL++A+       +     +D AQ  A AIE+AM  ++   G  YK K+R LSFNLKDPKN  LR +V    I P+ L+D+S  +L +D+ R   A++RE  T +A+   ++EASTD FKCGKCK+RKCTYYQ+QTRSADEP+TTFVTCVNC+NRW+F
Sbjct:  158 GDPLRDRTRELLAEAIAQAIGAPDVYASVEDVAQ-TAIAIENAMHAQWSDTGKEYKAKFRQLSFNLKDPKNPDLRRSVADGLISPAVLLDLSPEELGSDERRNSNAKIREHATNEAVRGQKKEASTDAFKCGKCKQRKCTYYQLQTRSADEPMTTFVTCVNCDNRWKF 324          
BLAST of Gchil5542.t1 vs. uniprot
Match: A0A1X6P3X2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3X2_PORUM)

HSP 1 Score: 160 bits (405), Expect = 1.890e-46
Identity = 84/162 (51.85%), Postives = 110/162 (67.90%), Query Frame = 0
Query:   66 MRDKVRILLSDALFNKDEHIVKSKDQAQIVAYAIEHAMFVKFDGN-GTSYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKKRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWR 226
            MRDKVR L++ AL+   + +V     A+  A A+E AMF     + G +YK KYR LSFNLKD KN  LRS VL  D+ P+ L+ MS+ +LAN++ +  R EV E M R+A P     A+TD F+CGKCK+R+ TY+QMQTRSADEP+TTFV C+ C NRW+
Sbjct:    1 MRDKVRSLIASALYKDTDGLVADLAGAEPAAAAVEAAMFTATGTDVGGAYKSKYRQLSFNLKDAKNVALRSRVLRGDLTPAVLVGMSNEELANEETKAYRKEVAETMLREAQPGGNARATTDMFRCGKCKQRRTTYHQMQTRSADEPMTTFVCCLECGNRWK 162          
BLAST of Gchil5542.t1 vs. uniprot
Match: A0A7S2ZFF0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZFF0_9RHOD)

HSP 1 Score: 160 bits (404), Expect = 9.340e-46
Identity = 80/165 (48.48%), Postives = 116/165 (70.30%), Query Frame = 0
Query:   64 DKMRDKVRILLSDALFNKDEHIVKSKDQAQIVAYAIEHAMFVKFDGNGTSYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKKRAEVREKMTRDAMPY--TQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWR 226
            D +R +V+ +L++AL+ + E  V+S ++A  +A  +E  M+  F G   +YK K+R+L+FNLKD KN +LRS V+   + P  LI MSS +LAN + R+   ++ +   R+A  Y  ++  A+TD FKCGKCK+RKCTYYQ+QTRSADEPLT+FVTC+ CNNRW+
Sbjct:   39 DPVRKRVKEMLANALYKESEGHVESLEKAMEIAVKLELEMYTVFHGTNQAYKDKFRTLNFNLKDEKNERLRSLVVSGAVGPERLITMSSQELANPERRESNTKIEKNNMREAQLYNPSKHAATTDLFKCGKCKQRKCTYYQLQTRSADEPLTSFVTCMVCNNRWK 203          
BLAST of Gchil5542.t1 vs. uniprot
Match: A0A7J7PD88_9CHLO (Transcription elongation factor n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PD88_9CHLO)

HSP 1 Score: 159 bits (402), Expect = 7.670e-45
Identity = 85/184 (46.20%), Postives = 118/184 (64.13%), Query Frame = 0
Query:   45 KSVGDTEACKEYDVKHPTGDKMRDKVRILLSDALFNKDEHIVKSKDQAQIVAYAIEHAMFVKFDGN-GTSYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKKRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 227
            KS G  +A         TGD  RD++R LL D L    +     +D  ++ A  +E A++ +F+ + G  Y  K RSLSFNLKDP N  LR+ VL   + P EL+DM   +LA+D  R++  ++R++   +A+    Q+ASTD FKCG+CK++KCTYYQMQTRSADEP+TTFVTCVNC  +W+F
Sbjct:   70 KSSGSGKASGPLRPPPKTGDGKRDRIRQLLCDGLCLVPDDQRSGQDPGEVAA-EVEAAIYARFNQHTGPEYGAKVRSLSFNLKDPANPDLRARVLQGQVDPQELVDMPPEELASDSKRRENHKIRQEAAAEAVRGQTQQASTDMFKCGRCKQKKCTYYQMQTRSADEPMTTFVTCVNCGQKWKF 252          
BLAST of Gchil5542.t1 vs. uniprot
Match: A0A7S0RUH1_9CHLO (Transcription elongation factor n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RUH1_9CHLO)

HSP 1 Score: 159 bits (403), Expect = 1.820e-44
Identity = 91/189 (48.15%), Postives = 115/189 (60.85%), Query Frame = 0
Query:   45 KSVGDTEACKEYDV---KHPTGDKMRDKVRILLSDALFNKDEHIVKSKD---QAQIVAYAIEHAMFVKFDGNGTSYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKKRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 227
            KS  D E  K       K  TGD  RDK+ + L +AL      + +  D   +  +V  +IE AMF KF G    YK KYRS+SFNLKD +N  LR  VL  DI P  L+ +SS +L +D  R+    +R+ M R+       ++STD+FKCGKC +RK  YYQMQTRSADEP+TTFVTCVNCNNRW+F
Sbjct:  109 KSKADEEVVKSPTTPAAKPNTGDPQRDKLAVSLCEALAVVLGEVGEDADGLAEPSLVGISIEAAMFRKFGGMTKEYKAKYRSISFNLKDSRNPDLRRKVLSGDISPYTLLTLSSEELGSDSKREANEAIRQHMMRECERGQTTQSSTDQFKCGKCGQRKTIYYQMQTRSADEPMTTFVTCVNCNNRWKF 297          
BLAST of Gchil5542.t1 vs. uniprot
Match: UPI001CF9CAD6 (transcription elongation factor TFIIS-like n=3 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CF9CAD6)

HSP 1 Score: 158 bits (399), Expect = 2.880e-43
Identity = 82/171 (47.95%), Postives = 116/171 (67.84%), Query Frame = 0
Query:   64 DKMRDKVRILLSDALFN-------KDEHIVKSKDQAQIVAYAIEHAMFVKFDGNGTSYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKKRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 227
            D +RDK+R LL +AL         +D H+V + D  + VA ++E AMF K   +  + K KYRS+ FN+KDPKN  LR  VLL +I P  L+ M+  ++A+D  +++  +++EK   D       +A+TD+FKCG+C++RKCTYYQMQTRSADEP+TT+VTCVNCNN W+F
Sbjct:  185 DSLRDKIRELLVEALSKVAGEVDEEDVHVVNACDPIR-VAVSVESAMFDKLGRSNGAQKLKYRSIMFNIKDPKNPDLRRKVLLGEIKPERLVTMTPEEMASDARQQEINQIKEKALFDCERGGAPKATTDQFKCGRCRQRKCTYYQMQTRSADEPMTTYVTCVNCNNHWKF 354          
BLAST of Gchil5542.t1 vs. uniprot
Match: A0A2R6XT52_MARPO (Transcription elongation factor n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XT52_MARPO)

HSP 1 Score: 155 bits (392), Expect = 3.440e-42
Identity = 85/173 (49.13%), Postives = 117/173 (67.63%), Query Frame = 0
Query:   62 TGDKMRDKVRILLSDALFNK------DEHIVKSKDQAQI-VAYAIEHAMFVKFDGNGTSYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKKRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 227
            TGD  RD++R LL++A F+K      D+ + K+K +  + VA  +E AMF K   +  + K KYRS+ FNLKD  N  LR  VLL +I P +L+ MS  D+A+D  + +  ++++K   +     +  ASTD+FKCGKCK+RKCTY+QMQTRSADEP+TTFVTCVNCNN W+F
Sbjct:  187 TGDSTRDRIRELLAEA-FSKVLTEAQDDLLQKAKMKDIVHVAVTVESAMFKKLGLSKDANKTKYRSIMFNLKDANNPDLRRRVLLGEIEPEQLMTMSVDDMASDQRKAENKKIKDKALFECERGLKAAASTDQFKCGKCKQRKCTYFQMQTRSADEPMTTFVTCVNCNNHWKF 358          
BLAST of Gchil5542.t1 vs. uniprot
Match: A0A090M994_OSTTA (Transcription elongation factor S-II, central domain n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M994_OSTTA)

HSP 1 Score: 154 bits (388), Expect = 4.250e-42
Identity = 81/169 (47.93%), Postives = 113/169 (66.86%), Query Frame = 0
Query:   62 TGDKMRDKVRILLSDAL-FNKDEHIVKSKDQAQIVAYA--IEHAMFVKFDGNGTSYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKKRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 227
            T D  RD+ R + +DAL     +  V++ +  ++ A A  IE AM  K+   G  YK K R L+FN++DPKN  LR+ + + +I    LID++  +L +++ R+   ++RE    +A+   QQEASTD FKCGKCK+RKCTYYQ+QTRSADEP+TTFVTCVNC NRW+F
Sbjct:  141 TADAARDRTREIFADALAMCIADGAVEASNAGKLAAIADQIEEAMTAKWPEGGKDYKAKVRQLAFNMRDPKNPDLRTNLAMGEISADVLIDLTPEELGSNERRQANEKIREFAEWEAVRGQQQEASTDAFKCGKCKQRKCTYYQLQTRSADEPMTTFVTCVNCGNRWKF 309          
The following BLAST results are available for this feature:
BLAST of Gchil5542.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6V5_9FLOR8.060e-10975.88Transcription elongation factor TFIIS n=1 Tax=Grac... [more]
R7QEZ4_CHOCR2.730e-8760.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
C1NA42_MICPC9.470e-4852.38Transcription elongation factor n=1 Tax=Micromonas... [more]
A0A1X6P3X2_PORUM1.890e-4651.85Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S2ZFF0_9RHOD9.340e-4648.48Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7J7PD88_9CHLO7.670e-4546.20Transcription elongation factor n=1 Tax=Scenedesmu... [more]
A0A7S0RUH1_9CHLO1.820e-4448.15Transcription elongation factor n=1 Tax=Pyramimona... [more]
UPI001CF9CAD62.880e-4347.95transcription elongation factor TFIIS-like n=3 Tax... [more]
A0A2R6XT52_MARPO3.440e-4249.13Transcription elongation factor n=3 Tax=Marchantia... [more]
A0A090M994_OSTTA4.250e-4247.93Transcription elongation factor S-II, central doma... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 188..227
e-value: 1.1E-20
score: 84.7
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 188..226
e-value: 1.1E-18
score: 66.8
IPR001222Zinc finger, TFIIS-typePROSITEPS00466ZF_TFIIS_1coord: 190..225
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 186..226
score: 14.243057
IPR003618Transcription elongation factor S-II, central domainSMARTSM00510mid_6coord: 64..166
e-value: 2.0E-24
score: 97.2
IPR003618Transcription elongation factor S-II, central domainPFAMPF07500TFIIS_Mcoord: 62..174
e-value: 8.5E-30
score: 103.6
IPR003618Transcription elongation factor S-II, central domainPROSITEPS51321TFIIS_CENTRALcoord: 66..183
score: 26.737823
NoneNo IPR availableGENE3D2.20.25.10coord: 157..227
e-value: 7.5E-26
score: 91.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..33
NoneNo IPR availablePANTHERPTHR11477:SF36TRANSCRIPTION ELONGATION FACTOR TFIIScoord: 59..227
NoneNo IPR availablePANTHERPTHR11477TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEINcoord: 59..227
NoneNo IPR availableCDDcd13749Zn-ribbon_TFIIScoord: 181..227
e-value: 9.03185E-30
score: 103.069
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 167..226
IPR035100Transcription elongation factor, IIS-typePIRSFPIRSF006704TFIIScoord: 2..227
e-value: 1.6E-63
score: 213.0
IPR036575Transcription elongation factor S-II, central domain superfamilyGENE3D1.10.472.30coord: 48..156
e-value: 2.8E-26
score: 93.9
IPR036575Transcription elongation factor S-II, central domain superfamilySUPERFAMILY46942Elongation factor TFIIS domain 2coord: 50..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2367634..2368317 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5542.t1Gchil5542.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 2367634..2368317 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5542.t1 ID=Gchil5542.t1|Name=Gchil5542.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=228bp
MADLNKKLSATKTIDKKAKVSTPRKHLPAEDPAEDPAEPPSSSPKSVGDT
EACKEYDVKHPTGDKMRDKVRILLSDALFNKDEHIVKSKDQAQIVAYAIE
HAMFVKFDGNGTSYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDM
SSTDLANDDLRKKRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTY
YQMQTRSADEPLTTFVTCVNCNNRWRF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR003618TFIIS_cen_dom
IPR035100TF_IIS-typ
IPR036575TFIIS_cen_dom_sf