Gchil5535.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5535.t1
Unique NameGchil5535.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length88
Homology
BLAST of Gchil5535.t1 vs. uniprot
Match: A0A2V3J739_9FLOR (Small nuclear ribonucleoprotein E n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J739_9FLOR)

HSP 1 Score: 161 bits (408), Expect = 5.030e-50
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 0
Query:    1 MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIYQKRDSKQRLGRILLKGDTITMMTAATR 87
            M+ RSKKIM QPINLIFRFLQNRT +EIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVE++QKRDS+Q+LGRILLKGDTITMMT ATR
Sbjct:   15 MSSRSKKIMVQPINLIFRFLQNRTLIEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEVHQKRDSRQKLGRILLKGDTITMMTTATR 101          
BLAST of Gchil5535.t1 vs. uniprot
Match: R7QU35_CHOCR (Small nuclear ribonucleoprotein E n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QU35_CHOCR)

HSP 1 Score: 142 bits (357), Expect = 1.980e-42
Identity = 68/87 (78.16%), Postives = 76/87 (87.36%), Query Frame = 0
Query:    1 MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIYQKRDSKQRLGRILLKGDTITMMTAATR 87
            M  R++KIMTQPI+LIFRFLQNRTRVEIWLYDN   RIQGCIIGFDEYMNLVLD+AVE+ +K  S  +LGRILLKGDTITM+TAA R
Sbjct:    1 MGSRAQKIMTQPISLIFRFLQNRTRVEIWLYDNPQTRIQGCIIGFDEYMNLVLDEAVEVVEKNSSSTKLGRILLKGDTITMLTAAPR 87          
BLAST of Gchil5535.t1 vs. uniprot
Match: A0A8J5XBH6_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XBH6_DIALT)

HSP 1 Score: 126 bits (317), Expect = 2.490e-36
Identity = 59/84 (70.24%), Postives = 73/84 (86.90%), Query Frame = 0
Query:    1 MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIYQKRDSKQRLGRILLKGDTITMMTA 84
            MA R +K+MTQPINLIFRFLQN+TR+++WLY+ TD+RI+G IIGFDEYMNLVLDDA EI  K+ S++ LGRILLKGD IT++ A
Sbjct:    1 MAGRVQKVMTQPINLIFRFLQNKTRIQVWLYEQTDLRIEGRIIGFDEYMNLVLDDAEEIALKKKSRKALGRILLKGDNITLLMA 84          
BLAST of Gchil5535.t1 vs. uniprot
Match: R1EMN3_EMIHU (Small nuclear ribonucleoprotein E n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EMN3_EMIHU)

HSP 1 Score: 126 bits (316), Expect = 3.650e-36
Identity = 59/85 (69.41%), Postives = 74/85 (87.06%), Query Frame = 0
Query:    1 MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIYQKRDSKQRLGRILLKGDTITMMTAA 85
            MA + +KIMTQPINLIFRFLQN+TRV+IWLY+NT++RI+G IIGFDEYMNLVLD+A E+  K+  ++ LGRILLKGD+IT+M  A
Sbjct:    1 MATKVQKIMTQPINLIFRFLQNKTRVQIWLYENTELRIEGKIIGFDEYMNLVLDEAEELLMKKKERKPLGRILLKGDSITLMMTA 85          
BLAST of Gchil5535.t1 vs. uniprot
Match: A0A087SJG3_AUXPR (Small nuclear ribonucleoprotein E n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SJG3_AUXPR)

HSP 1 Score: 125 bits (314), Expect = 6.950e-36
Identity = 59/85 (69.41%), Postives = 73/85 (85.88%), Query Frame = 0
Query:    1 MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIYQKRDSKQRLGRILLKGDTITMMTAA 85
            MAP+ K+IMTQPINLIFRFLQ+R +V+IWLYD+ D+RI+G IIGFDEYMNLVLD+  E+  KR +++ LGRILLKGD IT+M AA
Sbjct:    1 MAPKVKRIMTQPINLIFRFLQSRQKVQIWLYDHNDLRIEGRIIGFDEYMNLVLDEGEEVSVKRQTRKPLGRILLKGDNITLMQAA 85          
BLAST of Gchil5535.t1 vs. uniprot
Match: A0A7S0LPS2_9EUKA (Small nuclear ribonucleoprotein E n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LPS2_9EUKA)

HSP 1 Score: 126 bits (316), Expect = 7.010e-36
Identity = 58/82 (70.73%), Postives = 73/82 (89.02%), Query Frame = 0
Query:    1 MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIYQKRDSKQRLGRILLKGDTITMM 82
            M+ + +KIMTQPINLIFRFLQN+TRV+IWL++NTD+RI+G I+GFDEYMNLVLDDA E+  K+ S++ LGRILLKGD IT+M
Sbjct:   23 MSTKVQKIMTQPINLIFRFLQNKTRVQIWLFENTDLRIEGRIVGFDEYMNLVLDDATELSIKKKSRKELGRILLKGDNITLM 104          
BLAST of Gchil5535.t1 vs. uniprot
Match: E1ZJG0_CHLVA (Small nuclear ribonucleoprotein E n=3 Tax=Chlorella clade TaxID=2511126 RepID=E1ZJG0_CHLVA)

HSP 1 Score: 125 bits (313), Expect = 9.870e-36
Identity = 58/85 (68.24%), Postives = 74/85 (87.06%), Query Frame = 0
Query:    1 MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIYQKRDSKQRLGRILLKGDTITMMTAA 85
            M P+ K+IMTQPINLIFRFLQ+R +++IWLY++ D+RI+G IIGFDEYMNLVLD+A E+  KR +++ LGRILLKGDTIT+M AA
Sbjct:    1 MPPKVKRIMTQPINLIFRFLQSRQKIQIWLYEHNDLRIEGRIIGFDEYMNLVLDEAEEVSVKRKTRKALGRILLKGDTITLMQAA 85          
BLAST of Gchil5535.t1 vs. uniprot
Match: D8LD43_ECTSI (Small nuclear ribonucleoprotein E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD43_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.940e-35
Identity = 57/79 (72.15%), Postives = 71/79 (89.87%), Query Frame = 0
Query:    4 RSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIYQKRDSKQRLGRILLKGDTITMM 82
            R KK+MTQPI+LIFRFLQNRTRV+IWLY+NT +RI+G I+GFDEYMNLVLD+A E+  K D +++LGRI+LKGDTIT+M
Sbjct:   14 RVKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLM 92          
BLAST of Gchil5535.t1 vs. uniprot
Match: A0A6U0Y1E1_9STRA (Small nuclear ribonucleoprotein E n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0Y1E1_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.910e-35
Identity = 59/84 (70.24%), Postives = 72/84 (85.71%), Query Frame = 0
Query:    2 APRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIYQKRDSKQRLGRILLKGDTITMMTAA 85
            + R KK+MTQPINLIFRFLQNRTR+ IWLY+N++  I+G I+GFDEYMNLVLDDA EI QK++++  LGRILLKGDTIT+M  A
Sbjct:   10 STRVKKVMTQPINLIFRFLQNRTRILIWLYENSNTMIEGRIVGFDEYMNLVLDDAQEIDQKQETRTDLGRILLKGDTITLMQEA 93          
BLAST of Gchil5535.t1 vs. uniprot
Match: A0A7S0J6C2_9EUKA (Small nuclear ribonucleoprotein E n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J6C2_9EUKA)

HSP 1 Score: 123 bits (309), Expect = 9.470e-35
Identity = 58/82 (70.73%), Postives = 72/82 (87.80%), Query Frame = 0
Query:    1 MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMNLVLDDAVEIYQKRDSKQRLGRILLKGDTITMM 82
            M+ + +KIMTQPINLIFRFLQN+TRV+IWL++NTD+RI+G I GFDEYMNLVLDDA E+  K+ S++ LGRILLKGD IT+M
Sbjct:   29 MSTKVQKIMTQPINLIFRFLQNKTRVQIWLFENTDLRIEGRITGFDEYMNLVLDDAEELSIKKKSRKALGRILLKGDNITLM 110          
The following BLAST results are available for this feature:
BLAST of Gchil5535.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J739_9FLOR5.030e-5088.51Small nuclear ribonucleoprotein E n=1 Tax=Gracilar... [more]
R7QU35_CHOCR1.980e-4278.16Small nuclear ribonucleoprotein E n=1 Tax=Chondrus... [more]
A0A8J5XBH6_DIALT2.490e-3670.24Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
R1EMN3_EMIHU3.650e-3669.41Small nuclear ribonucleoprotein E n=1 Tax=Emiliani... [more]
A0A087SJG3_AUXPR6.950e-3669.41Small nuclear ribonucleoprotein E n=1 Tax=Auxenoch... [more]
A0A7S0LPS2_9EUKA7.010e-3670.73Small nuclear ribonucleoprotein E n=1 Tax=Coccolit... [more]
E1ZJG0_CHLVA9.870e-3668.24Small nuclear ribonucleoprotein E n=3 Tax=Chlorell... [more]
D8LD43_ECTSI1.940e-3572.15Small nuclear ribonucleoprotein E n=2 Tax=Ectocarp... [more]
A0A6U0Y1E1_9STRA3.910e-3570.24Small nuclear ribonucleoprotein E n=1 Tax=Rhizochr... [more]
A0A7S0J6C2_9EUKA9.470e-3570.73Small nuclear ribonucleoprotein E n=1 Tax=Calcidis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 18..84
e-value: 6.9E-17
score: 72.1
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 19..83
e-value: 1.3E-16
score: 60.0
NoneNo IPR availableGENE3D2.30.30.100coord: 1..85
e-value: 8.0E-36
score: 123.8
NoneNo IPR availablePANTHERPTHR11193:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 4..85
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 4..85
IPR027078Small nuclear ribonucleoprotein ECDDcd01718Sm_Ecoord: 6..84
e-value: 1.04292E-47
score: 144.234
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 11..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2351263..2351733 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5535.t1Gchil5535.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 2351263..2351733 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5535.t1 ID=Gchil5535.t1|Name=Gchil5535.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=88bp
MAPRSKKIMTQPINLIFRFLQNRTRVEIWLYDNTDIRIQGCIIGFDEYMN
LVLDDAVEIYQKRDSKQRLGRILLKGDTITMMTAATR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027078snRNP-E
IPR010920LSM_dom_sf