Gchil5445.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5445.t1
Unique NameGchil5445.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length334
Homology
BLAST of Gchil5445.t1 vs. uniprot
Match: A0A2V3J7E4_9FLOR (Rho GTPase-activating protein 22 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J7E4_9FLOR)

HSP 1 Score: 530 bits (1365), Expect = 6.860e-188
Identity = 274/341 (80.35%), Postives = 292/341 (85.63%), Query Frame = 0
Query:    1 MATAGPHADQ---FGDPAIVRQEDMMAGMMGGGGTGIVDNGTSLIARAEALNAFMRMQPAANMARQTPHSL-APTSLPPRPSPQYDAPVEPGCLCFGSSKPS-RRPSARHVSSQVT--RPRREYYPDNLSVQPERHPWTSHMEWLILACIDFLELNGLGERTLFAVSAVDDLVRNMHVDIGVGLPSNTDPHVAAGVIKAQIRHANEPLVAKECLRAYIESQPTDDSQK-ASVFKTAATYRESHLARTVDATVRISSPRRAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLMLGKITAFVMNMIEDARAFDENLCQKISELQSST 333
            MA AG H  Q    G+PAI+ +EDMMAGMMGGGGTGIVDNGTSLIARAEALNAFMRMQPAAN AR  PH+  AP      PSP YD P EPGCLCFGSSK S RRP ARHV + ++  RPRREYYPDNLSVQPERHPWT HMEWLILACIDFLEL+GL ERTLFAVSAVDDLVRNMHVDIGV LPSNTDPHVAAGVIKAQIRHANEPLVAK+CL+AYI SQP DD Q  A    T + YR+SHLARTVDAT R+SSPRRAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLMLGKITAFVM MIEDAR FDE LCQKI++L++ +
Sbjct:    1 MAAAGLHRHQDPPIGEPAIIHKEDMMAGMMGGGGTGIVDNGTSLIARAEALNAFMRMQPAANQARHAPHTFSAPPPQQHIPSPHYDPPEEPGCLCFGSSKQSSRRPPARHVPNHISSARPRREYYPDNLSVQPERHPWTPHMEWLILACIDFLELHGLDERTLFAVSAVDDLVRNMHVDIGVKLPSNTDPHVAAGVIKAQIRHANEPLVAKDCLKAYIASQPPDDGQSTAPAASTPSIYRDSHLARTVDATERMSSPRRAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLMLGKITAFVMTMIEDARVFDEKLCQKIADLEAKS 341          
BLAST of Gchil5445.t1 vs. uniprot
Match: R7QNW3_CHOCR (Rho-GAP domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNW3_CHOCR)

HSP 1 Score: 330 bits (847), Expect = 2.330e-110
Identity = 181/276 (65.58%), Postives = 199/276 (72.10%), Query Frame = 0
Query:   54 MQPAANMARQTPHSLAPTSLPPRPSPQYDAPVEPGCLCFGSSKPSRRPSARHVSSQVTRPRREYYPDNLSVQPERHPWTSHMEWLILACIDFLELNGLGERTLFAVSAVDDLVRNMHVDIGVGLPSNTDPHVAAGVIKAQIRHANEPLVAKECLRAYIESQPTDDSQKASVFKTAATYRESHLARTVDATVRISSPRRAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLMLGKITAFVMNMIEDARAFDENLCQKISEL 329
            MQP AN AR    S +PT     P+         GC C GS +   +PS R V+ +    +REYYPDNLS+QP RH W   MEWLI+AC+DFLE  GL ER +FAVSAVDDLVRNM V+ G  L  NTDP+VAAGVIKAQIRHA+E LV KECLR YIE Q   +    S      +Y ESHLARTVD T RIS  RRAY+LAR MRLLGRVSAN EVS+MNAHCLAKCVAPSMLHWDPNS FALLMLGKITAFVM MIEDAR FDENLCQKI EL
Sbjct:    1 MQPVANQARH--QSTSPTIPSEEPA---------GCFCLGS-RTVHQPS-REVAHRT---KREYYPDNLSIQPNRHKWGRRMEWLIVACVDFLEKEGLDERNIFAVSAVDDLVRNMTVEEGEELAKNTDPNVAAGVIKAQIRHADEALVGKECLRTYIELQQAREGD-GSPGDGLRSYEESHLARTVDDTKRISGARRAYVLARIMRLLGRVSANEEVSRMNAHCLAKCVAPSMLHWDPNSGFALLMLGKITAFVMTMIEDARVFDENLCQKIDEL 259          
BLAST of Gchil5445.t1 vs. uniprot
Match: A0A7S1TMH3_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TMH3_9RHOD)

HSP 1 Score: 160 bits (404), Expect = 6.810e-43
Identity = 107/334 (32.04%), Postives = 172/334 (51.50%), Query Frame = 0
Query:   15 AIVRQEDMMAGMMGGGGTGIVDNGTSLIARAEALNAFMRMQPA-------ANMARQTPHSLAPTSLPPRPSPQYDAPVEPGCLCFGSSKPSRRPSARHVSSQVTRPRREYYPDNLSVQPERHPWTSHMEWLILACIDFLELNGLGERTLFAVSAVDDLVRNMHVDIGVGLPSNTDPHVAAGVIKAQIRHANEPLVAKECLRAYIE-------------------SQPTDDSQKASVFKTAATYRESHLARTVDATVRISSPRRAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLMLGKITAFVMNMIEDARAFDENL 322
            A++ Q++++AG         V+  T LIAR EAL  F + Q         A  A QTP++ +  +        + + V     CFG+   +   +    S++   P        L VQ ++  W    E  +L CID L   G+ E+ LFAVSA  D V  + V +G+ LP N D HVAA  IK ++RHA EP +    L+ ++E                   S    D Q A++   + ++ +S + +T++      SP+RAY+ ARF+ LLG +++ +E ++MN+H LA C+ PS+L WD N+  ALL+L ++TAFV+ +I+DA+ + E +
Sbjct:    9 AVMGQQELLAGT--------VEKETLLIARPEALGHFEQQQAXXXXXXXRAAHAVQTPNAASANNSNSNSKQGFFSKV----FCFGADNSTATAAPSSGSARAAAPANL----ELEVQRKKFEWNELTEHTLLVCIDHLFKYGIREQRLFAVSADQDDVDALRVQLGMPLPENVDLHVAAATIKDRMRHAKEPFMPIAALKPWLEKKRSAAAETEHMSPPHSGRSSSFSDDQCAAL--ASGSFEDSVIKQTLEIMRNEVSPKRAYLCARFLLLLGYIASGIETTQMNSHNLALCITPSLLQWDNNAKQALLILSRMTAFVIQLIDDAQLYSEKV 324          
BLAST of Gchil5445.t1 vs. uniprot
Match: A0A1X6PAA0_PORUM (Rho-GAP domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PAA0_PORUM)

HSP 1 Score: 104 bits (259), Expect = 5.190e-22
Identity = 71/197 (36.04%), Postives = 89/197 (45.18%), Query Frame = 0
Query:   42 IARAEALNAFMRMQPAA------NMARQTPHSLAPTSLPPRPSPQYDAP---------------------VEPGCLCFGSSKPSRRPSARHVSSQVTRPRREYYPDNLSVQPERHPWTSHMEWLILACIDFLELNGLGERTLFAVSAVDDLVRNMHVDIGVGLPSNTDPHVAAGVIKAQIRHANEPLVAKECLRAYI 211
            IAR EA+N F++MQP A      N+A         T +  RPS   +                       + P   C G ++  R P                       +P R PWT   EW I+AC++ L+  GL E  LFAVSAVD  VR + V +G  LP  TDPHVA G IKA IR A+EPLV    L+AYI
Sbjct:   33 IARPEAMNVFIQMQPEASKALNRNLAAAAARQARSTDVDARPSGSRERNQTTRXXXXXXXXXXXXXXXLLLRPQRRCRGLARGGRAPXXXXXXXXXXX---XXXXXXXXXEPPRLPWTPDTEWQIVACVELLQREGLDEPNLFAVSAVDAHVRRLRVRVGAPLPGGTDPHVATGAIKAHIRAADEPLVPAASLQAYI 226          
The following BLAST results are available for this feature:
BLAST of Gchil5445.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J7E4_9FLOR6.860e-18880.35Rho GTPase-activating protein 22 n=1 Tax=Gracilari... [more]
R7QNW3_CHOCR2.330e-11065.58Rho-GAP domain-containing protein n=1 Tax=Chondrus... [more]
A0A7S1TMH3_9RHOD6.810e-4332.04Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A1X6PAA0_PORUM5.190e-2236.04Rho-GAP domain-containing protein n=1 Tax=Porphyra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000198Rho GTPase-activating protein domainSMARTSM00324RhoGAP_3coord: 133..316
e-value: 7.2E-5
score: 15.2
IPR000198Rho GTPase-activating protein domainPFAMPF00620RhoGAPcoord: 139..291
e-value: 7.9E-15
score: 55.0
IPR000198Rho GTPase-activating protein domainPROSITEPS50238RHOGAPcoord: 120..319
score: 15.446578
IPR008936Rho GTPase activation proteinGENE3D1.10.555.10Rho GTPase activation proteincoord: 105..318
e-value: 5.6E-21
score: 76.8
IPR008936Rho GTPase activation proteinSUPERFAMILY48350GTPase activation domain, GAPcoord: 138..316
NoneNo IPR availablePANTHERPTHR45808:SF2RHO GTPASE-ACTIVATING PROTEIN 68Fcoord: 120..319
NoneNo IPR availablePANTHERPTHR45808RHO GTPASE-ACTIVATING PROTEIN 68Fcoord: 120..319
NoneNo IPR availableCDDcd00159RhoGAPcoord: 138..314
e-value: 3.17506E-23
score: 92.3648

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1752257..1753258 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5445.t1Gchil5445.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 1752257..1753258 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5445.t1 ID=Gchil5445.t1|Name=Gchil5445.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=334bp
MATAGPHADQFGDPAIVRQEDMMAGMMGGGGTGIVDNGTSLIARAEALNA
FMRMQPAANMARQTPHSLAPTSLPPRPSPQYDAPVEPGCLCFGSSKPSRR
PSARHVSSQVTRPRREYYPDNLSVQPERHPWTSHMEWLILACIDFLELNG
LGERTLFAVSAVDDLVRNMHVDIGVGLPSNTDPHVAAGVIKAQIRHANEP
LVAKECLRAYIESQPTDDSQKASVFKTAATYRESHLARTVDATVRISSPR
RAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLM
LGKITAFVMNMIEDARAFDENLCQKISELQSST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000198RhoGAP_dom
IPR008936Rho_GTPase_activation_prot