Gchil5326.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5326.t1
Unique NameGchil5326.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length325
Homology
The following BLAST results are available for this feature:
BLAST of Gchil5326.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.90coord: 235..318
e-value: 1.2E-6
score: 30.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..224
NoneNo IPR availableCDDcd16449RING-HCcoord: 74..107
e-value: 0.00169438
score: 33.5949
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 67..118
e-value: 7.0E-6
score: 27.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 74..108
score: 8.830534

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1052059..1053033 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5326.t1Gchil5326.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 1052059..1053033 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5326.t1 ID=Gchil5326.t1|Name=Gchil5326.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=325bp
MRAPAESQAAACIRRSFLKVAVTVGARVPSFWKSLVPAARAASTTAHPSA
PPFFPRSIDIPASHRGCRRAMPNCDVCLGEARDVGVLRCNHSVCRACGVS
QSSCLVCNDVGGTKRRRFATTRFNPRSHRPNTPTKPAAAERIKLRPRQHR
SSSDQSAAFRSVQTSEARLKSVPTLEPHRQAAPGRSTTPESDQPEPPLKY
RKIVNGRRTSKTDADALSSESKNGMRRVQGPTAFDEVRCELRPLGSAPKI
QRCALRTTGRLPVYLVARYIRERLELPLAEQVIIKCSDEELTDDMTLGDL
ISHVWPASEGHLILDYEVPNYDAN*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING