Gchil5282.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5282.t1
Unique NameGchil5282.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length305
Homology
BLAST of Gchil5282.t1 vs. uniprot
Match: A0A2V3J1W2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1W2_9FLOR)

HSP 1 Score: 86.7 bits (213), Expect = 1.700e-15
Identity = 83/224 (37.05%), Postives = 108/224 (48.21%), Query Frame = 0
Query:   36 KSAKRNIISLEYRLQAAESECSRLLAILTEWQSTTPRHQPH-HNPHPLPVH-PHLQQVPTLAPAVVSTTPHPPKPHAHLLPSNSSLPSPAFNFGSIAPQPSPRETPPAPTATRSSNPTTQVIHSPIALHGTSWNTFSSSAQPFSHAATG-ATAHPSPHFSHGVHRTHSQPSIMALPQL---PGTHRQSQRQSFLAVHTALPYESLRNSLPPSGAPQSSEHHSQQ 253
            K  K+ I SL+ +LQAAESEC+RL+A+L + Q     HQ H  NP  LP H PHLQ +P    A   +T     P A LLPS+     P  NF ++ P  S R+         S  P + +  +P+  H   WN F   AQ FS+AA   A AHP    SH  H   SQP+  +LP L   P +H     Q     H+   Y S + SL     P+  +H S Q
Sbjct:  143 KPPKKTIHSLQLKLQAAESECARLVALLAKLQPNLLTHQSHPSNPSSLPHHQPHLQHLPPPPSASHCSTA---APSAQLLPSSGPR-DPPLNFDTVVPHASFRDAVAVAAVPASIAPNSDLPSAPVVHHSVPWNPFPP-AQQFSYAAASTAIAHPPAPLSHLPHPL-SQPAHTSLPHLSSVPHSH-----QPVAPAHSVALYTSHKRSLSRETRPKPQQHQSLQ 355          
BLAST of Gchil5282.t1 vs. uniprot
Match: R7QI34_CHOCR (BHLH domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QI34_CHOCR)

HSP 1 Score: 63.5 bits (153), Expect = 9.560e-8
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 0
Query:    1 MRMAEQIAELRQCVSDPNSGKTDKVSILQDAVSFIKSAKRNIISLEYRLQAAESECSRLLAILTEWQSTTP 71
            MRM +QIA+LRQ VS+PN G+TDKVS+LQD V+++K            L  +++EC  L ++L    S  P
Sbjct:  104 MRMTQQIAQLRQWVSNPNGGRTDKVSVLQDTVAYVKXXXXXXXXXXXALHHSKAECDHLRSLLNNSSSLVP 174          
The following BLAST results are available for this feature:
BLAST of Gchil5282.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J1W2_9FLOR1.700e-1537.05Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QI34_CHOCR9.560e-843.66BHLH domain-containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 35..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 275..298
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 194..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 238..262
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..304
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..159
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 2..37
e-value: 9.0E-6
score: 25.6
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 1..38
score: 10.461127
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 1..68
e-value: 1.2E-6
score: 30.8
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 2..66
IPR045239Transcription factor bHLH95-like, basic helix-loop-helix domainCDDcd11393bHLH_AtbHLH_likecoord: 2..46
e-value: 2.43839E-9
score: 50.6428

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:554231..555145 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5282.t1Gchil5282.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 554231..555145 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5282.t1 ID=Gchil5282.t1|Name=Gchil5282.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=305bp
MRMAEQIAELRQCVSDPNSGKTDKVSILQDAVSFIKSAKRNIISLEYRLQ
AAESECSRLLAILTEWQSTTPRHQPHHNPHPLPVHPHLQQVPTLAPAVVS
TTPHPPKPHAHLLPSNSSLPSPAFNFGSIAPQPSPRETPPAPTATRSSNP
TTQVIHSPIALHGTSWNTFSSSAQPFSHAATGATAHPSPHFSHGVHRTHS
QPSIMALPQLPGTHRQSQRQSFLAVHTALPYESLRNSLPPSGAPQSSEHH
SQQPHQSNLEPTQSPHPHPPSSPSRPLQDTQNTVLTHPADQASMSTPNAR
HPPQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR036638HLH_DNA-bd_sf
IPR045239bHLH95_bHLH