Gchil5277.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5277.t1
Unique NameGchil5277.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length106
Homology
BLAST of Gchil5277.t1 vs. uniprot
Match: A0A2V3IZ11_9FLOR (Translation initiation factor IF-1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ11_9FLOR)

HSP 1 Score: 147 bits (370), Expect = 1.860e-43
Identity = 77/105 (73.33%), Postives = 81/105 (77.14%), Query Frame = 0
Query:    1 MKVDRSGGGKRAKSAXXXXXXXXXXXXXXXXXXSELATKIEIDGTVMESLPSAVFKVELDNKCEVLAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 105
            MKVDR GGGKRAK+A                     ATKIEIDG VMESLPSA+FKVELDNK E+LAHISG+IRKNYIRILVGDRVKCELSPYDLTKGRITFRYK
Sbjct:   36 MKVDRRGGGKRAKNARQNKTVQAEERESNAP-----ATKIEIDGIVMESLPSAMFKVELDNKAEILAHISGRIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 135          
BLAST of Gchil5277.t1 vs. uniprot
Match: R7QEY7_CHOCR (Translation initiation factor IF1, Rhodoplastic n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEY7_CHOCR)

HSP 1 Score: 115 bits (289), Expect = 5.840e-32
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 0
Query:   36 LATKIEIDGTVMESLPSAVFKVELDNKCEVLAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 105
            +AT IEIDG V ESLPSAVF V+L+N   V  HISGKIRKNYI+ILVGD+V+CELSPYDLTKGRITFRYK
Sbjct:    1 MATTIEIDGIVTESLPSAVFTVQLENDAVVRGHISGKIRKNYIKILVGDKVRCELSPYDLTKGRITFRYK 70          
BLAST of Gchil5277.t1 vs. uniprot
Match: A0A060DDF7_9BRYO (Translation initiation factor IF-1, chloroplastic n=47 Tax=Embryophyta TaxID=3193 RepID=A0A060DDF7_9BRYO)

HSP 1 Score: 110 bits (274), Expect = 1.410e-29
Identity = 50/66 (75.76%), Postives = 60/66 (90.91%), Query Frame = 0
Query:   40 IEIDGTVMESLPSAVFKVELDNKCEVLAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 105
            I+++GTV ESLP+A+F+V LDN+CEVL HISGKIR+NYIRIL GDRVK ELSPYDLTKGRIT+R +
Sbjct:    7 IDMEGTVTESLPNAMFRVRLDNECEVLTHISGKIRRNYIRILPGDRVKVELSPYDLTKGRITYRLR 72          
BLAST of Gchil5277.t1 vs. uniprot
Match: IF1C_STAPU (Translation initiation factor IF-1, chloroplastic n=6 Tax=Zygnematophycidae TaxID=2684882 RepID=IF1C_STAPU)

HSP 1 Score: 108 bits (271), Expect = 3.910e-29
Identity = 51/66 (77.27%), Postives = 60/66 (90.91%), Query Frame = 0
Query:   40 IEIDGTVMESLPSAVFKVELDNKCEVLAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 105
            IE++G V ESLP+A+F+V LDN C+VLAHISGKIRKNYIRIL+GDRVK ELSPYDLTKGRIT+R +
Sbjct:    7 IEMEGIVTESLPNAMFRVCLDNGCQVLAHISGKIRKNYIRILLGDRVKVELSPYDLTKGRITYRLR 72          
BLAST of Gchil5277.t1 vs. uniprot
Match: A0A0X8FAW5_9LACT (Translation initiation factor IF-1 n=3 Tax=Aerococcus TaxID=1375 RepID=A0A0X8FAW5_9LACT)

HSP 1 Score: 108 bits (270), Expect = 4.840e-29
Identity = 49/66 (74.24%), Postives = 60/66 (90.91%), Query Frame = 0
Query:   40 IEIDGTVMESLPSAVFKVELDNKCEVLAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 105
            IE++GTV E+LP+A+FKVEL+N  E+LAH+SGKIR NYIRIL GDRVK E+SPYDLTKGRIT+R+K
Sbjct:    7 IEVEGTVTETLPNAMFKVELENGVEILAHVSGKIRVNYIRILPGDRVKVEMSPYDLTKGRITYRFK 72          
BLAST of Gchil5277.t1 vs. uniprot
Match: A0A2M7A7V6_9BACT (Translation initiation factor IF-1 n=1 Tax=Armatimonadetes bacterium CG07_land_8_20_14_0_80_40_9 TaxID=1973916 RepID=A0A2M7A7V6_9BACT)

HSP 1 Score: 108 bits (270), Expect = 4.840e-29
Identity = 50/67 (74.63%), Postives = 60/67 (89.55%), Query Frame = 0
Query:   39 KIEIDGTVMESLPSAVFKVELDNKCEVLAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 105
            KIE++GT+MESLP+A+FKVEL N   VLAH+SGKIR N+IRIL GDRV+ ELSPYDLT+GRIT+RYK
Sbjct:    6 KIEVEGTIMESLPNAMFKVELKNGHRVLAHVSGKIRMNFIRILPGDRVQLELSPYDLTRGRITYRYK 72          
BLAST of Gchil5277.t1 vs. uniprot
Match: A0A7V8A4G9_9BACT (Translation initiation factor IF-1 n=1 Tax=Fusobacteria bacterium TaxID=2060921 RepID=A0A7V8A4G9_9BACT)

HSP 1 Score: 108 bits (270), Expect = 4.840e-29
Identity = 50/66 (75.76%), Postives = 60/66 (90.91%), Query Frame = 0
Query:   40 IEIDGTVMESLPSAVFKVELDNKCEVLAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 105
            IE++G +++SLP+A+FKVELDN  +VLAHISGKIR N+IRIL GDRVK ELSPYDLTKGRIT+RYK
Sbjct:    7 IEVEGVILDSLPNAMFKVELDNGHQVLAHISGKIRVNFIRILPGDRVKLELSPYDLTKGRITYRYK 72          
BLAST of Gchil5277.t1 vs. uniprot
Match: IF1C_CHAVU (Translation initiation factor IF-1, chloroplastic n=4 Tax=Streptophytina TaxID=131221 RepID=IF1C_CHAVU)

HSP 1 Score: 108 bits (270), Expect = 5.710e-29
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 0
Query:   40 IEIDGTVMESLPSAVFKVELDNKCEVLAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 105
            IEI+G V ESLP+A+F+V LDN CEVL HISGKIRKNYIRIL GDRVK ELSPYDLTKGRIT+R +
Sbjct:    7 IEIEGLVTESLPNAMFRVCLDNGCEVLTHISGKIRKNYIRILPGDRVKVELSPYDLTKGRITYRLR 72          
BLAST of Gchil5277.t1 vs. uniprot
Match: A0A522TFW7_9BACT (Translation initiation factor IF-1 n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A522TFW7_9BACT)

HSP 1 Score: 107 bits (268), Expect = 9.760e-29
Identity = 50/66 (75.76%), Postives = 59/66 (89.39%), Query Frame = 0
Query:   40 IEIDGTVMESLPSAVFKVELDNKCEVLAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 105
            IE+ GTV+E LP+ +FKVEL+NK EVLAHISGKIRKNYI+IL GDRV+ ELSPYDL +GRIT+RYK
Sbjct:    7 IEVMGTVLEPLPNGMFKVELENKMEVLAHISGKIRKNYIKILPGDRVQIELSPYDLKRGRITYRYK 72          
BLAST of Gchil5277.t1 vs. uniprot
Match: IF1C_ZYGCR (Translation initiation factor IF-1, chloroplastic n=5 Tax=Zygnematophycidae TaxID=2684882 RepID=IF1C_ZYGCR)

HSP 1 Score: 107 bits (268), Expect = 1.120e-28
Identity = 50/66 (75.76%), Postives = 59/66 (89.39%), Query Frame = 0
Query:   40 IEIDGTVMESLPSAVFKVELDNKCEVLAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 105
            IE++G V ESLP+A+F+V LDN CEVLAHISGKIR+NYIRIL+ DRVK ELSPYDLTKGRIT+R +
Sbjct:    7 IEMEGVVTESLPNAMFRVYLDNGCEVLAHISGKIRRNYIRILLADRVKVELSPYDLTKGRITYRLR 72          
The following BLAST results are available for this feature:
BLAST of Gchil5277.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IZ11_9FLOR1.860e-4373.33Translation initiation factor IF-1, chloroplastic ... [more]
R7QEY7_CHOCR5.840e-3278.57Translation initiation factor IF1, Rhodoplastic n=... [more]
A0A060DDF7_9BRYO1.410e-2975.76Translation initiation factor IF-1, chloroplastic ... [more]
IF1C_STAPU3.910e-2977.27Translation initiation factor IF-1, chloroplastic ... [more]
A0A0X8FAW5_9LACT4.840e-2974.24Translation initiation factor IF-1 n=3 Tax=Aerococ... [more]
A0A2M7A7V6_9BACT4.840e-2974.63Translation initiation factor IF-1 n=1 Tax=Armatim... [more]
A0A7V8A4G9_9BACT4.840e-2975.76Translation initiation factor IF-1 n=1 Tax=Fusobac... [more]
IF1C_CHAVU5.710e-2978.79Translation initiation factor IF-1, chloroplastic ... [more]
A0A522TFW7_9BACT9.760e-2975.76Translation initiation factor IF-1 n=1 Tax=Acidoba... [more]
IF1C_ZYGCR1.120e-2875.76Translation initiation factor IF-1, chloroplastic ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 37..105
e-value: 1.5E-6
score: 37.8
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 40..103
e-value: 1.2E-23
score: 82.6
IPR006196RNA-binding domain, S1, IF1 typePROSITEPS50832S1_IF1_TYPEcoord: 32..105
score: 20.351273
IPR004368Translation initiation factor IF-1TIGRFAMTIGR00008TIGR00008coord: 38..104
e-value: 8.6E-34
score: 113.3
IPR004368Translation initiation factor IF-1PANTHERPTHR33370TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTICcoord: 21..105
IPR004368Translation initiation factor IF-1HAMAPMF_00075IF_1coord: 32..105
score: 24.144545
IPR004368Translation initiation factor IF-1CDDcd04451S1_IF1coord: 40..103
e-value: 6.13719E-37
score: 117.622
NoneNo IPR availableGENE3D2.40.50.140coord: 33..105
e-value: 1.5E-33
score: 116.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availablePANTHERPTHR33370:SF1TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTICcoord: 21..105
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 38..104

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:496039..496450 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5277.t1Gchil5277.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 496039..496450 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5277.t1 ID=Gchil5277.t1|Name=Gchil5277.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=106bp
MKVDRSGGGKRAKSAREKKAAPQSASSSSSSSSSELATKIEIDGTVMESL
PSAVFKVELDNKCEVLAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRI
TFRYK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR006196RNA-binding_domain_S1_IF1
IPR004368TIF_IF1
IPR012340NA-bd_OB-fold