Gchil526.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil526.t1
Unique NameGchil526.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length218
Homology
BLAST of Gchil526.t1 vs. uniprot
Match: A0A2V3IPQ1_9FLOR (Fucoxanthin-chlorophyll a-c binding protein A, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPQ1_9FLOR)

HSP 1 Score: 372 bits (954), Expect = 2.900e-129
Identity = 173/217 (79.72%), Postives = 199/217 (91.71%), Query Frame = 0
Query:    1 MVAFVPALSVAARPVLTRSSICGARLSAKPVSRGVVRMAETSPSVPFLRKPRNLSEDMVGYAGFDPFAISDLVDIKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPQFANPVATEAFFQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFEDGAVPGQLGFNPMGLKFDEKTRLREIKNGRLAMCGVGGVIHSMFLYKMPVVAQLLDFKPMSVPFY 217
            MVAF+PAL++ +RP L RSSICGA+LS   VSRG VRM+E+SPSVPFL KPRNLSEDM GYAGFDPFA+SD +D+KWLQ++EIKHGR+CMLAFLGF+VQEFVHLPGP+FANPVATEA FQVP+AGLWQIFLFCGL EFI HKGKITY+NMFEDGAVPG+LGFNPMGLK  E+ +L+EIKNGRLAM GVGGVIHSM LYK+PV+AQLLDFKPM++P+Y
Sbjct:    1 MVAFIPALALGSRPALARSSICGAQLSHTAVSRGAVRMSESSPSVPFLAKPRNLSEDMPGYAGFDPFALSDNIDVKWLQQAEIKHGRVCMLAFLGFLVQEFVHLPGPEFANPVATEALFQVPAAGLWQIFLFCGLMEFIGHKGKITYVNMFEDGAVPGELGFNPMGLKITERVKLQEIKNGRLAMVGVGGVIHSMLLYKVPVIAQLLDFKPMALPYY 217          
BLAST of Gchil526.t1 vs. uniprot
Match: Q7X8N6_GRIJA (Light-harvest protein n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7X8N6_GRIJA)

HSP 1 Score: 322 bits (825), Expect = 1.300e-109
Identity = 151/212 (71.23%), Postives = 179/212 (84.43%), Query Frame = 0
Query:    1 MVAFVPALSVAARPVLTRSSICGARLSAKPV-SRGVVRMAETSPSVPFLRKPRNLSEDMVGYAGFDPFAISDLVDIKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPQFANPVATEAFFQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFEDGAVPGQLGFNPMGLKFDEKTRLREIKNGRLAMCGVGGVIHSMFLYKMPVVAQLLDFKP 211
            M AFVPALS+AARP L+RS++CGA +SA    +   V M++ SPSVPFL KP+NLSEDMVGY GFDP  +S+LVDIKWLQESEIKHGR+CMLA  G + QEFVHLP P++ANP+ATEA  QVPSA LWQIFLFCGL+EF+LHKGKI+Y++MF DGAVPG+LGFNPM LK  +  +L+EIKNGRLAMC VGG IHSMF+YK P++AQLLDFKP
Sbjct:    1 MAAFVPALSLAARPTLSRSALCGAAVSAAVAPAPSAVSMSDLSPSVPFLPKPKNLSEDMVGYTGFDPLGLSNLVDIKWLQESEIKHGRVCMLAVAGILAQEFVHLPDPRYANPLATEALNQVPSAALWQIFLFCGLAEFVLHKGKISYVDMFSDGAVPGELGFNPMNLKISDDMKLKEIKNGRLAMCAVGGFIHSMFIYKTPIIAQLLDFKP 212          
BLAST of Gchil526.t1 vs. uniprot
Match: Q7XY90_GRIJA (Light-harvest protein n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY90_GRIJA)

HSP 1 Score: 271 bits (693), Expect = 1.380e-89
Identity = 132/217 (60.83%), Postives = 161/217 (74.19%), Query Frame = 0
Query:    1 MVAFVPALSVAARPVLTRSSICGARLSAKPVSRG--VVRMAETSPSVPFLRKPRNLSEDMVGYAGFDPFAISDLVDIKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPQFANPVATEAFFQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFEDGAVPGQLGFNPMGLKFDEKTRLREIKNGRLAMCGVGGVIHSMFLYKMPVVAQLLDFKPMSVP 215
            M AFVP L     P+L+RSS+ GA LS  P +     V M+E S SVPFL+KP NL + ++GY GFDP   +  VD +W+QE+EIKHGR+ MLA LG +VQEF+HLP   F NP+ATEAFFQVPSAGL+QIFLFCG +E  LHKGK++  +MF DGA PG+LGFNPM L   +  RL+EIKNGRLAMC  GG IHSM LYK P++AQLLDF+P+ VP
Sbjct:    1 MNAFVPTL-----PLLSRSSLGGASLSVAPRASAPATVSMSERSASVPFLKKPENLPDTLIGYTGFDPLNFTGRVDYRWMQEAEIKHGRVSMLAVLGMLVQEFIHLPAKGFENPLATEAFFQVPSAGLFQIFLFCGFAELYLHKGKLSPSDMFSDGATPGELGFNPMNLDVSDSLRLKEIKNGRLAMCASGGFIHSMLLYKTPIIAQLLDFQPLKVP 212          
BLAST of Gchil526.t1 vs. uniprot
Match: R7QPP5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPP5_CHOCR)

HSP 1 Score: 254 bits (648), Expect = 2.160e-81
Identity = 114/152 (75.00%), Postives = 132/152 (86.84%), Query Frame = 0
Query:   63 GFDPFAISDLVDIKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPQFANPVATEAFFQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFEDGAVPGQLGFNPMGLKFDEKTRLREIKNGRLAMCGVGGVIHSMFLYKMPVVAQLLDFKPMSV 214
            GFDP A+S L+D+KWLQESEIKHGRICMLAFLG +VQEFVHLP   F+NPVATEA  QVP+ GLWQIF+FCG+SEFILHKG+++Y +MF DGA PG+LGFNPM LK  ++ RL EIKNGRLAMCGVGGVIHSMF+YK P+VAQLLDFK M +
Sbjct:  156 GFDPLALSQLMDVKWLQESEIKHGRICMLAFLGMLVQEFVHLPNAAFSNPVATEALGQVPAGGLWQIFIFCGISEFILHKGRVSYTDMFTDGAEPGKLGFNPMNLKITDRIRLAEIKNGRLAMCGVGGVIHSMFIYKTPIVAQLLDFKAMPL 307          
BLAST of Gchil526.t1 vs. uniprot
Match: A0A1X6NTR2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTR2_PORUM)

HSP 1 Score: 237 bits (605), Expect = 3.470e-76
Identity = 112/200 (56.00%), Postives = 142/200 (71.00%), Query Frame = 0
Query:   19 SSICGARLSAKPVSRGVVRMAETSPSVPFLRKPRNLSEDMVGYAGFDPFAISDLVDIKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPQFANPVATEAFFQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFEDGAVPGQLGFNPMGL-----KFDEKTRLREIKNGRLAMCGVGGVIHSMFLYKMPVVAQLLDFKPMS 213
            +S  GAR+ +   S   V MA  S SVPFL +P      M G  GFDP  +S  +DIKWL+E E+K+GR+ MLAFLG +VQEFVHLP P FANPVAT+AFFQVP+ GLWQ+FL CGL EF+ H+GK++Y +MFEDG +PG  GF+P+GL        +K  L E+KNGRLAM G+GGVIHS F+Y  P+V+QL  F P++
Sbjct:   12 TSFIGARVCSVAPSAATVTMAARSASVPFLPQPAACDGSMAGDVGFDPLNLSGFIDIKWLREGELKNGRVAMLAFLGVLVQEFVHLPSPLFANPVATDAFFQVPAGGLWQVFLACGLCEFVSHRGKLSYDDMFEDGRIPGNFGFDPLGLYKGTPAQKKKLELAEVKNGRLAMIGIGGVIHSNFIYHQPIVSQLTHFVPIT 211          
BLAST of Gchil526.t1 vs. uniprot
Match: A0A7S0T6N2_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6N2_9RHOD)

HSP 1 Score: 222 bits (566), Expect = 2.450e-70
Identity = 114/204 (55.88%), Postives = 144/204 (70.59%), Query Frame = 0
Query:   19 SSICGARLSAKPVSRG--VVRMAETSPSVPFLRKPRNLSEDMVGYAGFDPFAISDLVDIKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPQFANPVATEAFFQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFEDGAVPGQLGFNPMGLKFD----EKTRLREIKNGRLAMCGVGGVIHSMFLYKMPVVAQLLDFKPMSVPF 216
            S   GAR+S   V R   VV MAE S SVPFL KP N+ E MVGY GFDP  +S  +  ++LQESEIKHGRICMLA +GF+VQE VHLPG  F+  +ATEAF +VP+ GLWQIF+ CG++E+I HKGK+TY+++  D   PG +GF+P+ L  D    +K +L EIKNGRLAM  +GG IH M+L K  V+ QL +FK  S+PF
Sbjct:    9 SGFSGARVSTAAVCRSSNVVMMAEKSASVPFLSKPANIDESMVGYTGFDPLGLSTYLSARFLQESEIKHGRICMLAVVGFLVQEVVHLPGEVFSAKLATEAFSKVPTGGLWQIFIACGVAEYIGHKGKMTYMDISADKGTPGAMGFDPLNLGKDPEKFKKFQLNEIKNGRLAMIAIGGFIHQMWLTKQGVLEQLGNFK--SLPF 210          
BLAST of Gchil526.t1 vs. uniprot
Match: Q9FDZ6_GALSU (Light-harvesting protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q9FDZ6_GALSU)

HSP 1 Score: 218 bits (556), Expect = 1.490e-68
Identity = 112/178 (62.92%), Postives = 129/178 (72.47%), Query Frame = 0
Query:   42 SPSVPFLRKPRNLSEDMVGYAGFDPFAISDLVDIKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPQFANPVATEAFFQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFED-GAVPGQLGFNPMGLKFDEKTRLR----EIKNGRLAMCGVGGVIHSMFLYKMPVVAQLLDFKPMSV 214
            SPSVPFL +P+NL     G  GFDP  ISDL+DI+WL+ESEIKHGRI MLA LGFIVQEFVHLPG  F+N VA +AFFQVP  GLWQIFLF GL EF+++KGK+T L+MF D    PG  GF+P+GL  D +TR R    EIKNGRLAM  VGG IH MFL    VV QL  F+ + V
Sbjct:   48 SPSVPFLERPQNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRIAMLAALGFIVQEFVHLPGQVFSNKVAVDAFFQVPRGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQTRRRYQVAEIKNGRLAMLAVGGFIHHMFLTHQGVVEQLTHFRSLPV 225          
BLAST of Gchil526.t1 vs. uniprot
Match: M2VTV2_GALSU (Light-harvesting complex protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VTV2_GALSU)

HSP 1 Score: 218 bits (554), Expect = 2.800e-68
Identity = 117/204 (57.35%), Postives = 138/204 (67.65%), Query Frame = 0
Query:   16 LTRSSICGARLSAKPVSRGVVRMAETSPSVPFLRKPRNLSEDMVGYAGFDPFAISDLVDIKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPQFANPVATEAFFQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFED-GAVPGQLGFNPMGLKFDEKTRLR----EIKNGRLAMCGVGGVIHSMFLYKMPVVAQLLDFKPMSV 214
            L+R S+C  RL    VS    +    S SVPFL +P+NL     G  GFDP  ISDL+DI+WL+ESEIKHGRICMLA +GFIVQEFVHLPG  F+N VA +A FQVPS GLWQIFLF GL EF+++KGK+T L+MF D    PG  GF+P+GL  D + R R    EIKNGRLAM  VGG IH M L    VV QL  F+ + V
Sbjct:   27 LSRQSLCVPRLFQTLVSNASTK----SLSVPFLERPKNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRICMLAAVGFIVQEFVHLPGEVFSNKVAIDALFQVPSGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQARKRYEVAEIKNGRLAMLAVGGFIHHMLLTHQGVVEQLTHFRSLPV 226          
BLAST of Gchil526.t1 vs. uniprot
Match: A0A5J4YSS5_PORPP (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSS5_PORPP)

HSP 1 Score: 198 bits (503), Expect = 9.270e-61
Identity = 96/184 (52.17%), Postives = 128/184 (69.57%), Query Frame = 0
Query:   36 VRMAETSPSVPFLRKPRNLSEDMVGYAGFDPFAISDLVDIKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPQFANPVATEAFFQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFEDGA-VPGQLGFNPMGLKFDE------KTRLREIKNGRLAMCGVGGVIHSMFLYKMPVVAQLLDFKPM 212
            ++M   S SVPFL KP  L   M G  GFDP   S+ + +++L+ESEIKHGR+ MLA LG  +QE VHLPG +F+NP+ATEAFFQVP+ G+ QIFL CGL+EFI H+GK+TY+++  D    PG +GF+P+ +   +      K  L E+KNGRLAM GVGG+IH+MF+   P + QL  FKP+
Sbjct:   29 LKMEGKSASVPFLTKPEKLDGSMAGDVGFDPLGFSNYLSLEYLRESEIKHGRVAMLACLGIWIQEIVHLPGKEFSNPLATEAFFQVPAGGIAQIFLACGLAEFIGHRGKMTYMDIAADKERKPGAMGFDPLNMSKGKSAEAMKKLELNEVKNGRLAMIGVGGLIHAMFISHQPTLFQLAHFKPL 212          
BLAST of Gchil526.t1 vs. uniprot
Match: A0A7S3EGJ9_9RHOD (Hypothetical protein (Fragment) n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EGJ9_9RHOD)

HSP 1 Score: 190 bits (483), Expect = 4.490e-58
Identity = 99/164 (60.37%), Postives = 114/164 (69.51%), Query Frame = 0
Query:   33 RGVVRMAETSPSVPFLRKPRNLSEDM-VGYAGFDPFAISDLVDIKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPQFANPVATEAFFQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFED-GAVPGQLGFNPMGLKFD----EKTRLREIKNGRLAMCGVGG 190
            R V  MAE SPS+PFL +P+     M     GFDP  +++ +D KWLQESEIKHGRICMLA LGFIVQEFVHLPG  FAN +AT+AF QVP  GL QIFLFCGL EFI HKG+ITY    ED   VPG  GF+P+GL  D    +K +  EI NGRLAM  +GG
Sbjct:   23 RSVTVMAEKSPSLPFLDRPKACDGTMGAADVGFDPLLLTEKLDPKWLQESEIKHGRICMLACLGFIVQEFVHLPGDVFANKLATDAFSQVPKEGLLQIFLFCGLMEFITHKGQITYAEQVEDKNRVPGAFGFDPLGLGKDPANFKKYQANEIVNGRLAMIAIGG 186          
The following BLAST results are available for this feature:
BLAST of Gchil526.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPQ1_9FLOR2.900e-12979.72Fucoxanthin-chlorophyll a-c binding protein A, chl... [more]
Q7X8N6_GRIJA1.300e-10971.23Light-harvest protein n=1 Tax=Griffithsia japonica... [more]
Q7XY90_GRIJA1.380e-8960.83Light-harvest protein n=1 Tax=Griffithsia japonica... [more]
R7QPP5_CHOCR2.160e-8175.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NTR2_PORUM3.470e-7656.00Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0T6N2_9RHOD2.450e-7055.88Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
Q9FDZ6_GALSU1.490e-6862.92Light-harvesting protein n=1 Tax=Galdieria sulphur... [more]
M2VTV2_GALSU2.800e-6857.35Light-harvesting complex protein n=1 Tax=Galdieria... [more]
A0A5J4YSS5_PORPP9.270e-6152.17Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
A0A7S3EGJ9_9RHOD4.490e-5860.37Hypothetical protein (Fragment) n=3 Tax=Rhodosorus... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 47..216
e-value: 3.4E-37
score: 130.3
NoneNo IPR availablePANTHERPTHR21649:SF89CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTICcoord: 52..212
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..217
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 35..209
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 51..194
e-value: 1.7E-34
score: 119.7
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 52..212

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000060_piloncontigtig00000060_pilon:702770..703423 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil526.t1Gchil526.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000060_pilon 702770..703423 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil526.t1 ID=Gchil526.t1|Name=Gchil526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=218bp
MVAFVPALSVAARPVLTRSSICGARLSAKPVSRGVVRMAETSPSVPFLRK
PRNLSEDMVGYAGFDPFAISDLVDIKWLQESEIKHGRICMLAFLGFIVQE
FVHLPGPQFANPVATEAFFQVPSAGLWQIFLFCGLSEFILHKGKITYLNM
FEDGAVPGQLGFNPMGLKFDEKTRLREIKNGRLAMCGVGGVIHSMFLYKM
PVVAQLLDFKPMSVPFY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln