Gchil5254.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5254.t1
Unique NameGchil5254.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length561
Homology
BLAST of Gchil5254.t1 vs. uniprot
Match: A0A2V3IHF9_9FLOR (Double homeobox protein 4C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHF9_9FLOR)

HSP 1 Score: 450 bits (1157), Expect = 1.030e-151
Identity = 261/392 (66.58%), Postives = 291/392 (74.23%), Query Frame = 0
Query:    1 MAHHQPQPPKLSNPAHHPLLPPXSQPXXXXXXXXXXXXXXLATTSTPTLGAAALLVTASPTTPALSTXXXXXXXXXXXVP-PAPPITLSAHPLPQPTHSKWRVTPAQKDVLLKAFDEEPYPELHKKNLLAHQLGVTTAQISKWFQHRREHLTRLGQFKAQYNRTRRTPEQLDVLQAAFDADRYPTAERLQQLAAQLQDVTPKQIKLWFKHRRKQDQKRRRSNSSPISLRSTQSLPSHAGQPALRSMRPTELSAPPHDPTRPDWRTTLPPSLVPNVQQCQPV------------------------PQAALIQTPPTANISYSFDPHQYYQYRQPQFLVTPSHSPFSKAEFLALQAAQTVLNSTPPPDAISRLAQLLNRPPDAIRDWFQNQTN 367
            MAHHQPQ  KLS+P   P LPP S P              LA+ STPT GAAALLVTASPTTPALSTXXXXXXXXXXX   PA P+ L+A PLPQPTHSKWRVTPAQKDVLLKAFDE+PYPEL KKN LA QLGVTT QISKWFQHRREHLTRLGQFKAQYNRTRRTPE+LDVLQAAFDA+RYP +ERLQQLAAQLQ VTPKQIKLWFKHRRKQDQKR+R+NSSPISLRS+ SLP H+  P+L SM P ++S+   DP R DWR+ +P +LVPNVQQ                            P AAL+Q PPT  + Y+FDPH YY Y +    +  S S FS+ E LALQAA  VLN+TPPPDAI+R+AQLLNRP DA+RDWF+ Q N
Sbjct:    7 MAHHQPQSNKLSHPHLLPSLPPHSHPSPLQLPTTPEFSAPLASASTPTFGAAALLVTASPTTPALSTXXXXXXXXXXXXXXPANPVALTAQPLPQPTHSKWRVTPAQKDVLLKAFDEQPYPELLKKNALARQLGVTTPQISKWFQHRREHLTRLGQFKAQYNRTRRTPEELDVLQAAFDAERYPNSERLQQLAAQLQGVTPKQIKLWFKHRRKQDQKRKRANSSPISLRSSASLPDHSAYPSLPSMHPPDVSSSSQDPMRSDWRSNIPTNLVPNVQQAPXXXXXXXXXXXXXXXXXXXXXXXXXXPHAALMQAPPTTAVPYTFDPHGYYPYTKSSQFIVASQSSFSRMEHLALQAAFAVLNATPPPDAIARIAQLLNRPYDAVRDWFRAQEN 398          
BLAST of Gchil5254.t1 vs. uniprot
Match: A0A7S1EU41_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EU41_9RHOD)

HSP 1 Score: 122 bits (307), Expect = 5.370e-26
Identity = 65/135 (48.15%), Postives = 88/135 (65.19%), Query Frame = 0
Query:   98 SKWRVTPAQKDVLLKAFDEEPYPELHKKNLLAHQLGVTTAQISKWFQHRREHLTRLGQFKAQYNRTRRTPEQLDVLQAAFDADRYPTAERLQQLAAQLQDVTPKQIKLWFKHRRKQDQKRRRSNSSPISLRSTQS 232
            ++W+ TPAQ+  LLK F+E PYPE+  K  LA  L +  AQISKWFQHRRE L + G+F  Q  R RRTPE+L++L++AF    YP  + +  L  +L D+ P+Q+KLWFKH+R    +  RS+S   S RS  S
Sbjct:   16 ARWKPTPAQRATLLKEFEENPYPEIETKLRLAQSLDLRHAQISKWFQHRREALVKKGRFSGQKRRDRRTPEELEILESAFAECAYPKTKDVDCLCTRLPDMQPQQVKLWFKHKRMSIARMIRSSSGRGSERSESS 150          
BLAST of Gchil5254.t1 vs. uniprot
Match: A0A7S1EPD8_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EPD8_9RHOD)

HSP 1 Score: 115 bits (289), Expect = 3.380e-25
Identity = 52/114 (45.61%), Postives = 81/114 (71.05%), Query Frame = 0
Query:   98 SKWRVTPAQKDVLLKAFDEEPYPELHKKNLLAHQLGVTTAQISKWFQHRREHLTRLGQFKAQYNRTRRTPEQLDVLQAAFDADRYPTAERLQQLAAQLQDVTPKQIKLWFKHRR 211
            ++W+ T  Q+ +L++ FD+EPYP +  K  LA ++GV   QI+KWFQHRRE L++ G+F+ Q  R RRTP++L VLQ AF+   YP+A+ +Q +  +L  ++  Q++LWFKH+R
Sbjct:   37 NRWKPTELQRSMLMEEFDKEPYPSVEYKGELASRIGVKRQQIAKWFQHRRESLSKAGKFEGQKQRDRRTPQELHVLQDAFNISPYPSADEIQNIVLKLPSLSEAQVRLWFKHKR 150          
BLAST of Gchil5254.t1 vs. uniprot
Match: A0A7S1THT7_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1THT7_9RHOD)

HSP 1 Score: 102 bits (253), Expect = 1.780e-20
Identity = 51/115 (44.35%), Postives = 78/115 (67.83%), Query Frame = 0
Query:   98 SKWRVTPAQKDVLLKAFDEEPYPELHKKNLLAHQLGVTTAQISKWFQHRREHLTRLGQF-KAQYNRTRRTPEQLDVLQAAFDADRYPTAERLQQLAAQLQDVTPKQIKLWFKHRR 211
            S+W+ T A+K +L ++++++PYP   +K  LA+QLGV   QISKWFQH+RE + + GQ  +A   + RRT E+L++L  AF+ + YPT   + +L  ++  +T  Q KLWFKHRR
Sbjct:   55 SRWKPTMAEKVILSESYEQQPYPSPEEKLKLANQLGVKKKQISKWFQHKRESMAKAGQLPEAVKQKDRRTHEELEILLQAFEENPYPTTSDVDELVKKIGTMTVPQTKLWFKHRR 169          
BLAST of Gchil5254.t1 vs. uniprot
Match: A0A7S3A1E6_9RHOD (Hypothetical protein (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A1E6_9RHOD)

HSP 1 Score: 104 bits (260), Expect = 4.330e-20
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 0
Query:   98 SKWRVTPAQKDVLLKAFDEEPYPELHKKNLLAHQLGVTTAQISKWFQHRREHLTRLGQFKAQYNRTRRTPEQLDVLQAAFDADRYPTAERLQQLAAQLQ-DVTPKQIKLWFKHRR 211
            ++W+ +  QK  L+  F E  YP+   K  LA QL V  AQ+SKWFQH+RE L++LG F  Q  R RRT EQL VLQ A D   YPTAE+++ +  +    +T KQ+KLWFKH+R
Sbjct:   21 TRWKPSEEQKGWLMGQFQENAYPDTDTKARLAAQLRVKRAQVSKWFQHKRESLSKLGHFNPQKQRERRTKEQLAVLQQALDRHPYPTAEQVEDVLRRTGGSMTAKQVKLWFKHKR 135          
BLAST of Gchil5254.t1 vs. uniprot
Match: A0A5J4Z290_PORPP (Double homeobox protein 4C n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z290_PORPP)

HSP 1 Score: 102 bits (255), Expect = 3.440e-19
Identity = 90/313 (28.75%), Postives = 137/313 (43.77%), Query Frame = 0
Query:   98 SKWRVTPAQKDVLLKAFDEEPYPELHKKNLLAHQLGVTTAQISKWFQHRREHLTRLGQFKAQYNRTRRTPEQLDVLQAAFDADRYPTAERLQQLAAQLQDVTPKQIKLWFKHRRKQDQKRRRSNSSPISLRSTQSLPSHAGQPALR------SMRPTELSAPPHDPTRPDWRTTLPPSLVPNVQQCQPVPQAALIQTPPTANISY--SFDPHQYY--QYRQPQFLVTPSHSPFSKAEFLALQAAQTVLNSTPPPDAIS--RLAQLLNRPPDAIRDWFQNQTNGRMADSHPTVASQDLPQNALMESPIMQVDEN 398
            ++W+ T  QK  LL  F++  YP + +K  +A  L V   ++SKWFQHRRE L RLGQFK +    RRTP +L  L+A+F  + Y + + +  L   +  ++  QI+LWFKH+R+   K  +  S+  +  S +   S AG PA        S RP+  ++PP           L P L  ++ + +   Q      P    +S   +  PH  +  Q R PQ         F   + +ALQ A     + P  D  S  RLA      P  +  W   +   R       V +   P      S ++   +N
Sbjct:  292 ARWKPTVEQKSYLLGEFEKNSYPSVEEKEAMADHLNVPRPRVSKWFQHRRESLVRLGQFKGESQPQRRTPAELAHLEASFANNPYSSRDEMAHLQEVIGTLSETQIRLWFKHKRRAMSKSGQKGSTASTYGSARGGSSVAGSPAPSPILAQGSERPSPNASPPLRGA--GQAQDLQPQLQVHLNKQKQAQQLPSYPPPLPMELSQKQAHSPHDQHRQQSRMPQAQYGVPMFHFHSDQLMALQGA---FIANPSMDVASERRLAHFFRMDPVQVSQWMTQERAVRSGSMVGFVPTGHAPAGTFTTSSVLPTAQN 599          
The following BLAST results are available for this feature:
BLAST of Gchil5254.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IHF9_9FLOR1.030e-15166.58Double homeobox protein 4C n=1 Tax=Gracilariopsis ... [more]
A0A7S1EU41_9RHOD5.370e-2648.15Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S1EPD8_9RHOD3.380e-2545.61Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A7S1THT7_9RHOD1.780e-2044.35Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A7S3A1E6_9RHOD4.330e-2048.70Hypothetical protein (Fragment) n=2 Tax=Rhodosorus... [more]
A0A5J4Z290_PORPP3.440e-1928.75Double homeobox protein 4C n=1 Tax=Porphyridium pu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 158..221
e-value: 7.8E-11
score: 52.0
coord: 95..157
e-value: 4.8E-7
score: 39.4
IPR001356Homeobox domainPFAMPF00046Homeodomaincoord: 161..215
e-value: 7.8E-14
score: 51.3
coord: 98..147
e-value: 2.3E-11
score: 43.4
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 156..217
score: 16.438654
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 93..153
score: 13.199593
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 162..208
e-value: 2.17798E-12
score: 59.9497
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 103..147
e-value: 7.57283E-11
score: 55.7125
NoneNo IPR availableGENE3D1.10.10.60coord: 327..366
e-value: 3.7E-5
score: 25.2
NoneNo IPR availableGENE3D1.10.10.60coord: 157..224
e-value: 1.6E-15
score: 58.3
coord: 93..156
e-value: 2.0E-13
score: 51.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 220..238
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 206..272
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..45
NoneNo IPR availablePANTHERPTHR24332HOMEOBOX PROTEIN CDXcoord: 12..158
coord: 162..415
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 80..149
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 161..227

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:266837..268519 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5254.t1Gchil5254.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 266837..268519 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5254.t1 ID=Gchil5254.t1|Name=Gchil5254.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=561bp
MAHHQPQPPKLSNPAHHPLLPPPSQPSSLLPPTTPDLSSPLATTSTPTLG
AAALLVTASPTTPALSTSPAQPIVTFTPVPPAPPITLSAHPLPQPTHSKW
RVTPAQKDVLLKAFDEEPYPELHKKNLLAHQLGVTTAQISKWFQHRREHL
TRLGQFKAQYNRTRRTPEQLDVLQAAFDADRYPTAERLQQLAAQLQDVTP
KQIKLWFKHRRKQDQKRRRSNSSPISLRSTQSLPSHAGQPALRSMRPTEL
SAPPHDPTRPDWRTTLPPSLVPNVQQCQPVPQAALIQTPPTANISYSFDP
HQYYQYRQPQFLVTPSHSPFSKAEFLALQAAQTVLNSTPPPDAISRLAQL
LNRPPDAIRDWFQNQTNGRMADSHPTVASQDLPQNALMESPIMQVDENCL
RQSPLTKSSMLDHQNPPSLHDLRKIDNDINMSEKSPKMVTDEMKAQSTRE
VESQKEFSTLDDKHNMDTSFRASAPKEASPTQNNGLHTVGTAMYPTYVYP
NSVVDGGLMVQHQSAPFQQPQASSTPTLAPLRYVPTSSSAAPYIAQNAVW
YHASPSMHPK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR009057Homeobox-like_sf