Gchil5241.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5241.t1
Unique NameGchil5241.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length230
Homology
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BLAST of Gchil5241.t1 vs. uniprot
Match: A0A2V3ISX3_9FLOR (SP-RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISX3_9FLOR)

HSP 1 Score: 255 bits (651), Expect = 1.570e-82
Identity = 129/229 (56.33%), Postives = 170/229 (74.24%), Query Frame = 0 
Query:    1 MEEYCGFSSAALIQVATSVASNEETPMAERVKQLQVLKKCGDXXXXXXXXXXXXXXXXKDLFDASRDEALEPEKIRDIYQRGLTSTKRQVAKASASKDHELKNIENMIQRIS-GTADNEIEEDMTTQQAPSLCPILRCALENPMKNSTCGHVYSLNGVIHLLMQANAPTGRVVPNTLAEIPGHFSARCPQFGCNKLLKSSTLKRDFATELTQRQQYVSTQGTETMEIED 228
            +E+Y GF+SAAL+Q A S+A++E+    E  ++L++LK+  D                K+LF+ S+D  LEP +I++IY++GL +T++ V + S S   EL NIE ++Q++S G  DN+IEED+TTQQAP+LCPILRCAL+NPMKN+ CGH+YSL GVI LLM  NAP GR VP T+AE+P HFSARCPQFGCNKLL+ S+LKRDFATELTQRQQ  S Q  E++EIED
Sbjct:   17 VEDYFGFASAALMQAAKSIAASEDKSKEEITQKLELLKQYADRIAKLDVMCKSRARVSKELFNKSKDAPLEPGQIKEIYEQGLENTQQTVDQTSTSNHPELINIERILQKVSDGMTDNDIEEDLTTQQAPTLCPILRCALDNPMKNTECGHIYSLKGVIQLLMHDNAPKGRDVPETIAEVPNHFSARCPQFGCNKLLRPSSLKRDFATELTQRQQQGSAQEPESVEIED 245
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BLAST of Gchil5241.t1 vs. uniprot
Match: R7QRH4_CHOCR (SP-RING-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRH4_CHOCR)

HSP 1 Score: 112 bits (279), Expect = 1.550e-26
Identity = 71/218 (32.57%), Postives = 107/218 (49.08%), Query Frame = 0 
Query:    2 EEYCGFSSAALIQVATSVASNEETPMAERVKQLQVLKKCGDXXXXXXXXXXXXXXXXKDLFDASRDEALEPEKIRDI---YQRGLTSTKRQVAKASASKDHELKNIENMIQRI--SGTADNEIEEDMTTQQAPSLCPILRCALENPMKNSTCGHVYSLNGVIHLLMQANAPTG-RVVPNTLAEIPGHFSARCPQFGCNKLLKSSTLKRDFATELTQRQ 213
            E+  G   A+L  ++  V+ NE+    ER+++L+ LK+                    ++      E    E I D+   Y  G+ S ++Q  ++S ++  E+  ++ +I R+  SG  D EIEE +        CP+L   +E P+K++ CGHVYSL GVI  L Q       R  P TL  +P  +  RCP  GC   + +  LKRDF TELTQRQ
Sbjct:   16 EDMLGILDASLAHISQLVSVNEKLSAEERIQRLETLKEAARDIAIVGAEAKGRSAACGEMARQLNMELQSGEPISDLLGLYDSGVESAEQQGQRSSYTRAPEVVRVQKLIDRLARSGDEDLEIEEAVGAASRTLRCPVLNQDIEKPVKSTVCGHVYSLAGVISALYQEQRVMDERRFPKTLDLVPAEYETRCPVVGCQHKISAGKLKRDFGTELTQRQ 233
The following BLAST results are available for this feature:
BLAST of Gchil5241.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ISX3_9FLOR1.570e-8256.33SP-RING-type domain-containing protein n=1 Tax=Gra... [more]
R7QRH4_CHOCR1.550e-2632.57SP-RING-type domain-containing protein n=1 Tax=Cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 101..121
IPR004181Zinc finger, MIZ-typePFAMPF11789zf-Nsecoord: 124..193
e-value: 5.4E-7
score: 29.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 123..225
e-value: 9.3E-12
score: 47.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:120857..121616 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5241.t1Gchil5241.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 120857..121616 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5241.t1 ID=Gchil5241.t1|Name=Gchil5241.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=230bp
MEEYCGFSSAALIQVATSVASNEETPMAERVKQLQVLKKCGDRIAKLNVK
SKCGGTVAKDLFDASRDEALEPEKIRDIYQRGLTSTKRQVAKASASKDHE
LKNIENMIQRISGTADNEIEEDMTTQQAPSLCPILRCALENPMKNSTCGH
VYSLNGVIHLLMQANAPTGRVVPNTLAEIPGHFSARCPQFGCNKLLKSST
LKRDFATELTQRQQYVSTQGTETMEIEDV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004181Znf_MIZ
IPR013083Znf_RING/FYVE/PHD