Gchil5118.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5118.t1
Unique NameGchil5118.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length142
Homology
BLAST of Gchil5118.t1 vs. uniprot
Match: A0A2V3J8F5_9FLOR (Eukaryotic translation initiation factor 4C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J8F5_9FLOR)

HSP 1 Score: 261 bits (668), Expect = 3.780e-88
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDSKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEGEEGEEGDDVVFDFETIDDI 141
            MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQD+KADIILKYSPDEARSLIKYGEIPDTTTINEG AEGE GEEGDDVVFDFETIDDI
Sbjct:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDAKADIILKYSPDEARSLIKYGEIPDTTTINEGTAEGELGEEGDDVVFDFETIDDI 141          
BLAST of Gchil5118.t1 vs. uniprot
Match: R7QL76_CHOCR (Eukaryotic translation initiation factor 4C n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7QL76_CHOCR)

HSP 1 Score: 253 bits (646), Expect = 8.560e-85
Identity = 131/141 (92.91%), Postives = 137/141 (97.16%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDSKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEGEEGEEGDDVVFDFETIDDI 141
            MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQV RMLGNGRCE+KCFDGTTRLCHIRGKLRKKVWVNAQDIVL+GLRDYQD KADIILKYSPDEAR+L+KYGEIPDTTTINE AAEGE+GEEGDDVVFDFE ID+I
Sbjct:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVNRMLGNGRCESKCFDGTTRLCHIRGKLRKKVWVNAQDIVLVGLRDYQDDKADIILKYSPDEARNLMKYGEIPDTTTINENAAEGEDGEEGDDVVFDFEAIDEI 141          
BLAST of Gchil5118.t1 vs. uniprot
Match: M2XFN2_GALSU (Eukaryotic translation initiation factor 4C n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XFN2_GALSU)

HSP 1 Score: 209 bits (531), Expect = 2.450e-67
Identity = 103/141 (73.05%), Postives = 116/141 (82.27%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDSKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEGEEGEEGDDVVFDFETIDDI 141
            MPKNKGKGGKNR        ++KREL+ KE+GQEYAQVTRMLGNGRCEA CFDGT RLCHIRGK+RKKVW+N+ DIVLIGLRDYQD KADIILKY+PDEAR+L   GEIPDTT INE     EEGEEG++V FDF+ +D I
Sbjct:    1 MPKNKGKGGKNRRRGKNDNEEEKRELVMKEEGQEYAQVTRMLGNGRCEALCFDGTRRLCHIRGKMRKKVWINSGDIVLIGLRDYQDEKADIILKYNPDEARALKAQGEIPDTTKINE-----EEGEEGEEVTFDFDDVDAI 136          
BLAST of Gchil5118.t1 vs. uniprot
Match: A0A7S0BT27_9RHOD (Eukaryotic translation initiation factor 4C n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BT27_9RHOD)

HSP 1 Score: 205 bits (521), Expect = 9.330e-66
Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDSKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEGEEGEEGD-DVVFDFETIDDI 141
            MPKNKGKGGKNR        D+KREL+FKEDGQEYAQV RMLGNGRCEA CFDG  RLCHIRGK+RKKVWVN  DIVLIGLRD+QD KADIILKYSPDEARSL  Y EIPD+T +NE  ++ E+  +GD D+VFD++ +D+I
Sbjct:    1 MPKNKGKGGKNRRRGKNDNEDEKRELVFKEDGQEYAQVKRMLGNGRCEAACFDGRQRLCHIRGKMRKKVWVNTGDIVLIGLRDFQDQKADIILKYSPDEARSLKHYNEIPDSTALNEALSDNED--QGDLDIVFDYDDVDEI 140          
BLAST of Gchil5118.t1 vs. uniprot
Match: A0A1X6NYR6_PORUM (S1-like domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NYR6_PORUM)

HSP 1 Score: 201 bits (510), Expect = 4.560e-64
Identity = 101/141 (71.63%), Postives = 113/141 (80.14%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDSKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEGEEGEEGDDVVFDFETIDDI 141
            M KNKGKGGKNR        D++RELIFKE+GQEYAQV RMLGNGRCE+ CFD   RLCHIRGKLRKKVWVNA DIVLIGLR+YQD KADIILKY+ DEARSL +YGEIPDTTTI+E A  GE     + VVF+F+ ID+I
Sbjct:    1 MGKNKGKGGKNRRRGKNDNDDERRELIFKEEGQEYAQVLRMLGNGRCESACFDSVKRLCHIRGKLRKKVWVNAGDIVLIGLREYQDEKADIILKYTADEARSLKQYGEIPDTTTIHENAEGGEGXXXXEGVVFEFDDIDEI 141          
BLAST of Gchil5118.t1 vs. uniprot
Match: A0A7S1TBZ0_9RHOD (Eukaryotic translation initiation factor 4C n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TBZ0_9RHOD)

HSP 1 Score: 199 bits (505), Expect = 2.550e-63
Identity = 108/142 (76.06%), Postives = 122/142 (85.92%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDSKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEGEE-GEEGDDVVFDFETIDDI 141
            MPKNKGKGGK  XXXXXXXX +KREL+FKEDGQEYAQVT+MLGNGRCE+ CFDG  RLCHIRGKLRKKVWVNA DIVL+GLR++QD KADIIL+Y+PDEAR L +YGE+P+ T INEG  EGEE G+E  DV F FE +DDI
Sbjct:    1 MPKNKGKGGKXXXXXXXXXXXEKRELVFKEDGQEYAQVTKMLGNGRCESLCFDGEKRLCHIRGKLRKKVWVNAGDIVLVGLREFQDEKADIILRYTPDEARHLKQYGELPEATKINEGVEEGEEMGDE--DVDFTFEDVDDI 140          
BLAST of Gchil5118.t1 vs. uniprot
Match: A0A5N6QLR4_9ROSI (Eukaryotic translation initiation factor 4C n=2 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6QLR4_9ROSI)

HSP 1 Score: 198 bits (503), Expect = 6.050e-63
Identity = 101/145 (69.66%), Postives = 111/145 (76.55%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDSKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEG----EEGEEGDDVVFDFETIDDI 141
            MPKNKGKGGKNR        DDKREL+FKEDGQEYAQV RMLGNGRCEA C DGT RLCHIRGK+ KKVW+ A DIVL+GLRDYQD KADIILKY PDEAR L  YGE+P+TT +NEG A G    +EG   + VVF+ E ID I
Sbjct:    1 MPKNKGKGGKNRKRGKNEADDDKRELLFKEDGQEYAQVNRMLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADIILKYMPDEARLLKAYGELPETTRLNEGIAAGLVEEDEGVGSNYVVFEDEDIDKI 145          
BLAST of Gchil5118.t1 vs. uniprot
Match: A0A5J4Z3N0_PORPP (Eukaryotic translation initiation factor 4C n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3N0_PORPP)

HSP 1 Score: 195 bits (495), Expect = 9.380e-62
Identity = 106/143 (74.13%), Postives = 120/143 (83.92%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDSKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEG-EEGEEGD-DVVFDFETIDDI 141
            MPKNKGKGG   XXXXXXXX  KREL+FKEDGQEYAQ+ +MLGNGRCEA CFDG  RLCHIRGKLRKKVWVN  DIVL+GLRD+QD KAD+ILKY+P+EAR+L +YGEIPDT  INEG  E  EEGE+G  DV FDF+ +D+I
Sbjct:    1 MPKNKGKGGXXXXXXXXXXXXXKRELVFKEDGQEYAQILKMLGNGRCEAFCFDGEKRLCHIRGKLRKKVWVNVGDIVLLGLRDFQDEKADVILKYTPEEARNLKRYGEIPDTAQINEGGGEEMEEGEDGGADVDFDFDDVDEI 143          
BLAST of Gchil5118.t1 vs. uniprot
Match: I1MKP2_SOYBN (Eukaryotic translation initiation factor 4C n=65 Tax=Pentapetalae TaxID=1437201 RepID=I1MKP2_SOYBN)

HSP 1 Score: 195 bits (495), Expect = 1.000e-61
Identity = 97/145 (66.90%), Postives = 109/145 (75.17%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDSKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEG----EEGEEGDDVVFDFETIDDI 141
            MPKNKGKGGKNR        D+KREL+FKEDGQEYAQV RMLGNGRCEA C DGT RLCHIRGK+ KKVW+ A DI+L+GLRDYQD KAD+ILKY PDEAR L  YGE+PDTT +NEG   G    E+G   D + F+ E ID I
Sbjct:    1 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDTTRLNEGIDAGLDEEEDGSGNDYIEFEDEDIDKI 145          
BLAST of Gchil5118.t1 vs. uniprot
Match: A0A7M7JIS4_VARDE (Eukaryotic translation initiation factor 4C n=3 Tax=Gamasina TaxID=1723665 RepID=A0A7M7JIS4_VARDE)

HSP 1 Score: 194 bits (494), Expect = 1.380e-61
Identity = 100/145 (68.97%), Postives = 114/145 (78.62%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDSKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEGEEGEEGDDVVFDF----ETIDDI 141
            MPKNKGKGGKNR         +KREL+FKEDGQEYAQV +MLGNGR EA CFDGT RLCHIRGKLRKKVW+N  DI+L+GLRDYQD+KAD+ILKY+PDEAR+L  YGE+P+   INE AA GEE EE D++ FD     E IDDI
Sbjct:    1 MPKNKGKGGKNRRRGKNENEAEKRELVFKEDGQEYAQVVKMLGNGRLEALCFDGTKRLCHIRGKLRKKVWINQGDIILVGLRDYQDAKADVILKYNPDEARNLKAYGELPEHAKINETAAFGEE-EEDDNIEFDDVSGDEDIDDI 144          
The following BLAST results are available for this feature:
BLAST of Gchil5118.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J8F5_9FLOR3.780e-8897.87Eukaryotic translation initiation factor 4C n=1 Ta... [more]
R7QL76_CHOCR8.560e-8592.91Eukaryotic translation initiation factor 4C n=2 Ta... [more]
M2XFN2_GALSU2.450e-6773.05Eukaryotic translation initiation factor 4C n=1 Ta... [more]
A0A7S0BT27_9RHOD9.330e-6671.13Eukaryotic translation initiation factor 4C n=1 Ta... [more]
A0A1X6NYR6_PORUM4.560e-6471.63S1-like domain-containing protein n=1 Tax=Porphyra... [more]
A0A7S1TBZ0_9RHOD2.550e-6376.06Eukaryotic translation initiation factor 4C n=1 Ta... [more]
A0A5N6QLR4_9ROSI6.050e-6369.66Eukaryotic translation initiation factor 4C n=2 Ta... [more]
A0A5J4Z3N0_PORPP9.380e-6274.13Eukaryotic translation initiation factor 4C n=1 Ta... [more]
I1MKP2_SOYBN1.000e-6166.90Eukaryotic translation initiation factor 4C n=65 T... [more]
A0A7M7JIS4_VARDE1.380e-6168.97Eukaryotic translation initiation factor 4C n=3 Ta... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001253Translation initiation factor 1A (eIF-1A)SMARTSM00652eIF1neu4coord: 28..110
e-value: 6.8E-47
score: 171.8
IPR001253Translation initiation factor 1A (eIF-1A)TIGRFAMTIGR00523TIGR00523coord: 14..109
e-value: 6.6E-34
score: 113.9
IPR001253Translation initiation factor 1A (eIF-1A)PANTHERPTHR21668EIF-1Acoord: 1..141
IPR001253Translation initiation factor 1A (eIF-1A)HAMAPMF_00216aIF_1Acoord: 16..110
score: 18.466574
IPR001253Translation initiation factor 1A (eIF-1A)CDDcd05793S1_IF1Acoord: 33..109
e-value: 8.38274E-43
score: 134.188
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 32..93
e-value: 6.1E-23
score: 80.4
IPR006196RNA-binding domain, S1, IF1 typePROSITEPS50832S1_IF1_TYPEcoord: 22..96
score: 31.341204
NoneNo IPR availableGENE3D2.40.50.140coord: 2..141
e-value: 1.3E-57
score: 195.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
IPR018104Translation initiation factor 1A (eIF-1A), conserved sitePROSITEPS01262IF1Acoord: 41..63
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..137

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004393_piloncontigtig00004393_pilon:2982899..2983602 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5118.t1Gchil5118.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004393_pilon 2982899..2983602 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5118.t1 ID=Gchil5118.t1|Name=Gchil5118.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=142bp
MPKNKGKGGKNRRRGKNDNDDDKRELIFKEDGQEYAQVTRMLGNGRCEAK
CFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDSKADIILKYSPDEA
RSLIKYGEIPDTTTINEGAAEGEEGEEGDDVVFDFETIDDI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001253TIF_eIF-1A
IPR006196RNA-binding_domain_S1_IF1
IPR018104TIF_eIF-1A_CS
IPR012340NA-bd_OB-fold