Gchil5047.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5047.t1
Unique NameGchil5047.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length210
Homology
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BLAST of Gchil5047.t1 vs. uniprot
Match: A0A2V3J5S4_9FLOR (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5S4_9FLOR)

HSP 1 Score: 222 bits (565), Expect = 1.180e-70
Identity = 113/170 (66.47%), Postives = 138/170 (81.18%), Query Frame = 0 
Query:    1 MKILSSPEGDGLLTNAEVHEWLKQKQFQTERRDVPEHEIKPPHATASISKQVQKYIETSPAGNITVASLGALFAKLEKFSLSAVEKLMIANIRPEAYAHLTPIIVDAFSRYDEDQLYEMLGIIDETLEKRTKPSEWNADDAGEQTHAMATEAPEQMNVNPQAILQQAANG 170
            MKILS+P+GDGLLTNAEVHEWLK+K+F+T RRDVPE  IKPPH+TASIS+QV++YIE+SPAGN++V+SL  L+ KLEKF LS VEKLMIANIRP+AYAHLTP+IVD +SRYDE+QLYEMLGII++TLEKRTKP E  A DA  +          + N N +  ++  ANG
Sbjct:    1 MKILSNPDGDGLLTNAEVHEWLKEKKFETARRDVPEGVIKPPHSTASISRQVRQYIESSPAGNVSVSSLRKLYEKLEKFKLSKVEKLMIANIRPDAYAHLTPLIVDVYSRYDENQLYEMLGIINDTLEKRTKPLEQAARDANGEELPSDVHGAHETNGNKEEAVEATANG 170
The following BLAST results are available for this feature:
BLAST of Gchil5047.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J5S4_9FLOR1.180e-7066.47DNA-directed RNA polymerase III subunit RPC9 n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006590RNA polymerase Rpb4/RPC9, coreSMARTSM00657rpol4neu2coord: 5..130
e-value: 0.0042
score: 5.2
IPR038324Rpb4/RPC9 superfamilyGENE3D1.20.1250.40coord: 1..128
e-value: 3.8E-19
score: 70.9
IPR005574RNA polymerase subunit Rpb4/RPC9PFAMPF03874RNA_pol_Rpb4coord: 12..126
e-value: 4.4E-13
score: 49.6
IPR038846DNA-directed RNA polymerase III subunit RPC9PANTHERPTHR15561CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEINcoord: 8..144
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 1..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004393_piloncontigtig00004393_pilon:2358936..2359737 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5047.t1Gchil5047.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004393_pilon 2358936..2359737 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5047.t1 ID=Gchil5047.t1|Name=Gchil5047.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=210bp
MKILSSPEGDGLLTNAEVHEWLKQKQFQTERRDVPEHEIKPPHATASISK
QVQKYIETSPAGNITVASLGALFAKLEKFSLSAVEKLMIANIRPEAYAHL
TPIIVDAFSRYDEDQLYEMLGIIDETLEKRTKPSEWNADDAGEQTHAMAT
EAPEQMNVNPQAILQQAANGANLGEQHAHEMHTTVKQEITENTQHTIDSA
VNAVNGVRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006590RNA_pol_Rpb4/RPC9_core
IPR038324Rpb4/RPC9_sf
IPR005574Rpb4/RPC9
IPR038846RPC9
IPR010997HRDC-like_sf