Gchil4350.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil4350.t1
Unique NameGchil4350.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length180
Homology
[Close]
BLAST of Gchil4350.t1 vs. uniprot
Match: A0A2V3IEV0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEV0_9FLOR)

HSP 1 Score: 124 bits (310), Expect = 4.090e-31
Identity = 67/125 (53.60%), Postives = 82/125 (65.60%), Query Frame = 0 
Query:   52 LSILKPSNFSPYHDRDSDRTSVKVRSFISGDRKVTTLGSSITDTQEVHIAACLANDDADIWISRVNRDAVSFCTLEALQDAMLQEFVPANERAMIRVTLIELHIGDGALETHITKCRELVDICST 176
            L +LK SNF PY  +D +R S KVRSFIS  R V+ L   +T  +EV IA CL  D AD+W +RV      F +LE LQ AM+QEFVPANE A  R++LI+L +  G LE HI+K REL DIC T
Sbjct:  154 LQVLKSSNFLPYCGKDHERNSTKVRSFISSIRIVSNLCRGLTAREEVDIAVCLLRDHADLWYNRVTLTGEHFASLEQLQAAMIQEFVPANEHANARLSLIKLRMN-GPLEPHISKFRELTDICGT 277
[Close]
BLAST of Gchil4350.t1 vs. uniprot
Match: A0A2V3IQ24_9FLOR (Retrotrans_gag domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ24_9FLOR)

HSP 1 Score: 53.5 bits (127), Expect = 8.280e-6
Identity = 32/90 (35.56%), Postives = 47/90 (52.22%), Query Frame = 0 
Query:   69 DRTSVKVRSFISGDRKVTTLGSSITDTQEVHIAACLANDDADIWISRVNRDAVSFCTLEALQDAMLQEFVPANERAMIRVTLIELHIGDG 158
            DR S KV+SF     K   L  + ++   + +A C   D A  W+ R+  +     +LE LQ  M+ EFVPANE+A   V L++L + D 
Sbjct:   64 DRNSEKVKSFFYSIPKYGKL-CNYSEHNMLDLAECYLQDRAASWMMRLENENRKPTSLEELQKTMVDEFVPANEKASAPVKLMDLRMKDS 152
The following BLAST results are available for this feature:
BLAST of Gchil4350.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IEV0_9FLOR4.090e-3153.60Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IQ24_9FLOR8.280e-635.56Retrotrans_gag domain-containing protein n=1 Tax=G... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:2212974..2213513 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4350.t1Gchil4350.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004373_pilon 2212974..2213513 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil4350.t1 ID=Gchil4350.t1|Name=Gchil4350.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=180bp
MALLVSQVEAIQNQIVAQPATQSPSAITVEQTTGTLSPPTSTHFTSSAPS
LLSILKPSNFSPYHDRDSDRTSVKVRSFISGDRKVTTLGSSITDTQEVHI
AACLANDDADIWISRVNRDAVSFCTLEALQDAMLQEFVPANERAMIRVTL
IELHIGDGALETHITKCRELVDICSTLVS*
back to top