Gchil4273.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil4273.t1
Unique NameGchil4273.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length253
Homology
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BLAST of Gchil4273.t1 vs. uniprot
Match: A0A2V3J137_9FLOR (GOLD domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J137_9FLOR)

HSP 1 Score: 332 bits (850), Expect = 2.780e-112
Identity = 164/245 (66.94%), Postives = 203/245 (82.86%), Query Frame = 0 
Query:    8 LSVLILFIFLQSLNAFQFILPEKTRKCFQEDVPLSTKILFTYTVAQGTGEMPVSLRIMDMTGKAIVVRQAIDHGLFAFRSPDRIPNVPQRNDWSLRDD--DTDDDAYFRAIPDGAGDNRVRYTFCFEHASSLHFPHLRVHGHAQERQIIFSIKSGTDAKTLEYYDKLAKEWQLTTTEKAFHIVEDSVSEIVRLVDEMRERELRVDHINKRTQRMVTMYAILTCTLIAAGAVYSSYATFTHLSQEK 250
            L +++L  F+   NA QFIL  K+RKCF+EDVPLST+ L TYTVAQG GEMPVSL + D+TGK+I+ RQAIDHG+F FRSPD IP + Q++DWSLRDD   T DDAYFRAIP GAGD+R+ Y FCFEH+SS+ FP   + G   +R+IIFSI+SGTDAKTLEYYDKLAKE  LT+TE+AF+IVED VSEIVRLVDEMRERELR+DH+N+RTQR+VT Y+I+TC  +A GA+Y+S+ATF HL+++K
Sbjct:    7 LRLILLTSFILKANALQFILQAKSRKCFREDVPLSTETLLTYTVAQGLGEMPVSLSVRDITGKSILDRQAIDHGVFTFRSPDEIPTIDQKSDWSLRDDYDGTGDDAYFRAIPGGAGDDRIPYYFCFEHSSSMRFPTFHISGRPHQRRIIFSIRSGTDAKTLEYYDKLAKEKHLTSTEEAFNIVEDRVSEIVRLVDEMRERELRLDHLNRRTQRVVTTYSIITCICVAIGAIYASFATFKHLARQK 251
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BLAST of Gchil4273.t1 vs. uniprot
Match: R7Q882_CHOCR (GOLD domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q882_CHOCR)

HSP 1 Score: 250 bits (638), Expect = 2.220e-79
Identity = 123/235 (52.34%), Postives = 171/235 (72.77%), Query Frame = 0 
Query:   19 SLNAFQFILPEKTRKCFQEDVPLSTKILFTYTVAQGTGEMPVSLRIMDMTGKAIVVRQAIDHGLFAFRSPDRIPNVPQRNDWSLRDDD--TDDDAYF-RAIPDGAGDNRVRYTFCFEHASSLHFPHLRVHGHAQERQIIFSIKSGTDAKTLEYYDKLAKEWQLTTTEKAFHIVEDSVSEIVRLVDEMRERELRVDHINKRTQRMVTMYAILTCTLIAAGAVYSSYATFTHLSQEK 250
            ++ + QF+L  KTRKCF+ED+PL +    TYTVAQG G+MP+SLRI D TG+ ++ + AIDHG+F+FR+P+ +P V +R+ W L+DD+   DDDAY+ +A PD  GD+R  Y FCFEH ++     + +   A +R++IF +KSG D +T+EYYDKLAKE  L++TE+ F IVED VS+IVRL+DEMR+RELR+ H++ RT R+V  Y+ L C  IA GAV +S ATF  L +EK
Sbjct:   72 TVQSLQFVLESKTRKCFREDIPLRSDATITYTVAQGNGDMPISLRITDSTGRIVLHKDAIDHGVFSFRAPNSLPGVAERDSWELKDDEYGEDDDAYWNKAGPDAVGDDRTSYRFCFEHVAA----GISLRAQALKRRVIFEVKSGNDVRTMEYYDKLAKEKHLSSTEELFRIVEDKVSDIVRLIDEMRQRELRMAHLSSRTSRVVAWYSALACGAIATGAVITSVATFKTLHREK 302
The following BLAST results are available for this feature:
BLAST of Gchil4273.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J137_9FLOR2.780e-11266.94GOLD domain-containing protein n=1 Tax=Gracilariop... [more]
R7Q882_CHOCR2.220e-7952.34GOLD domain-containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009038GOLD domainSMARTSM01190EMP24_GP25L_2coord: 22..244
e-value: 4.6E-9
score: 46.1
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 22..240
e-value: 4.1E-21
score: 75.7
IPR009038GOLD domainPROSITEPS50866GOLDcoord: 32..159
score: 9.645025
IPR015720Transmembrane emp24 domain-containing proteinPANTHERPTHR22811TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEINcoord: 7..234
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 244..252
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 222..243
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..221
NoneNo IPR availableTMHMMTMhelixcoord: 222..244
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:1789093..1789851 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4273.t1Gchil4273.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004373_pilon 1789093..1789851 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil4273.t1 ID=Gchil4273.t1|Name=Gchil4273.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=253bp
MSFTRLVLSVLILFIFLQSLNAFQFILPEKTRKCFQEDVPLSTKILFTYT
VAQGTGEMPVSLRIMDMTGKAIVVRQAIDHGLFAFRSPDRIPNVPQRNDW
SLRDDDTDDDAYFRAIPDGAGDNRVRYTFCFEHASSLHFPHLRVHGHAQE
RQIIFSIKSGTDAKTLEYYDKLAKEWQLTTTEKAFHIVEDSVSEIVRLVD
EMRERELRVDHINKRTQRMVTMYAILTCTLIAAGAVYSSYATFTHLSQEK
RV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom
IPR015720Emp24-like