Gchil4141.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil4141.t1
Unique NameGchil4141.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length286
Homology
BLAST of Gchil4141.t1 vs. uniprot
Match: A0A2V3J1L1_9FLOR (RuBisCo_chap_C domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1L1_9FLOR)

HSP 1 Score: 283 bits (723), Expect = 2.010e-92
Identity = 139/254 (54.72%), Postives = 186/254 (73.23%), Query Frame = 0
Query:   34 MVTPKHIRRSNEIKRLERQLEELRALREKLAHDK---AHPISDSQPKPRADEPERAPPIPDLLSMPQKTASDFITGKHNEESRFLSIASVDSEEFPTRILTIAGVIPELTTAQFKSTPAVLTNKRPDKGNLVITKLPEHYHGDIMSLPGSEVLAGCGDPVLVLAEQSEVSATSLPISEGDLVALVVDRDMNRRTFESTNFYVWDVRGNIRVGWAKEEPHPSQAECVGQVVFGIMEIKPDLRQKKSCWEEENETY 284
            MV PKH+RRSNEIKRL+RQLEELR LREKLA DK   A   +D  P      P  +   P +          F+  KH+E+SRFLS+ ++DS+E+  RIL+IAG +P LTT +FK+   +L NKRP+KGN++IT LPE + G+IM+LPGS+VL  C DP+++LA+  E+SA  LPI+E + VAL+V+R++ R TF + +FY WDV+G I+VGW + EP PSQA CVG+VV+G++EIKP+LR+ KSCWEEENETY
Sbjct:    1 MVAPKHVRRSNEIKRLQRQLEELRELREKLAADKETEAQAKADKSPTDGMPTPLSSSSRPAVAPKSDARVDKFLVRKHDEQSRFLSLMNIDSQEYAPRILSIAGTVPGLTTNEFKAKKPLLLNKRPEKGNVIITSLPEGFDGEIMALPGSDVLHACRDPIVILADVGEISAVELPITEDENVALLVERNVTRETFNNKSFYAWDVQGQIKVGWVESEPDPSQAICVGRVVYGMVEIKPELRKTKSCWEEENETY 254          
BLAST of Gchil4141.t1 vs. uniprot
Match: R7QT97_CHOCR (RuBisCo_chap_C domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QT97_CHOCR)

HSP 1 Score: 238 bits (606), Expect = 2.560e-74
Identity = 125/279 (44.80%), Postives = 180/279 (64.52%), Query Frame = 0
Query:    6 FVSFSSFTPGSHQQLRPNVVSQQSYGTRMVTPKHIRRSNEIKRLERQLEELRALREKLAHDKAHPISDSQPKPRADEPERAPPIPDLLSMPQKTASDFITGKHNEESRFLSIASVDSEEFPTRILTIAGVIPELTTAQFKSTPAVLTNKRPDKGNLVITKLPEHYHGDIMSLPGSEVLAGCGDPVLVLAEQSEVSATSLPISEGDLVALVVDRDMNRRTFESTNFYVWDVRGNIRVGWAKEEPHPSQAECVGQVVFGIMEIKPDLRQKKSCWEEENETY 284
            FV FS+F PG     R   V  ++   +M+  ++++ S EIKRL+++LEELRA+RE++A +K+ P   +         +   P    ++    T   F  GKH E SRFLS+++V++EE   RILT+AG +PELT  +F  TP VL N+ P+ GN+ +T LP  Y G I+++ G EV+A C DPV VL    E+SA  L IS+   +A+VV+R++++  F+ T FY W V G ++VGW KE P P  A+C+GQVVFG++E K +LR+KKSCWEEENETY
Sbjct:    7 FVPFSTFAPGLRPASRAAPVCSRNQ-PKMIARENVQGSEEIKRLQKKLEELRAMRERIAKEKSVPPPQAXXXXXXXXXQ---PAVQNVTPSNNTNLSFALGKHGEGSRFLSMSAVEAEEHFPRILTVAGRVPELTVKEFMETPPVLQNRPPNAGNMFVTMLPPGYQGQIIAMQGLEVIAKCMDPVAVLIPAEELSAAQLSISDDADIAVVVERNVSKLDFDKTKFYAWAVGGRVKVGWVKEMPSPDNAKCLGQVVFGMLEEKEELRKKKSCWEEENETY 281          
BLAST of Gchil4141.t1 vs. uniprot
Match: A0A2V3IG29_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IG29_9FLOR)

HSP 1 Score: 124 bits (312), Expect = 6.420e-31
Identity = 77/198 (38.89%), Postives = 117/198 (59.09%), Query Frame = 0
Query:   47 KRLERQLEELRALREKLAHDK---AHPISDSQPKPRADEPERAPPIPDLLSMPQKTASDFITGKHNEESRFLSIASVDSEEFPTRI------LTIAGVIPELTTAQFKSTPAVLTNKRPDKGNLVITKLPEHYHGDIMSLPGSEVLAGCGDPVLVLAEQSEVSATSLPISEGDLVALVVDRDMNRRTF---ESTNFYV 232
            K L+RQLEELR LREK A DK   A   +D  P      P  +   P L          F+  KH+E+SRFLS+ ++DS+E+  RI      L+I+G +  LTT + K+   +L NKR +K N++IT  PE +  + ++LPGS+VL    D +++LA+  E++A  LPI+E ++VA +V+R++  +TF   +  N YV
Sbjct:   10 KHLQRQLEELRELREKQAADKETEAQAKADKSPTDEMPTPLSSSSRPALAPNSDARVDIFLVRKHDEQSRFLSLMNIDSQEYAPRIEYAPRILSISGTVLGLTTNERKAKKPLLLNKRQEKENVIITSPPEVFDSESIALPGSDVLYAFRDLIVILADVVEITAVELPITENEIVAFLVERNVTSKTFNPFDPKNSYV 207          
BLAST of Gchil4141.t1 vs. uniprot
Match: A0A1E7FB03_9STRA (RuBisCo_chap_C domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FB03_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.700e-9
Identity = 54/184 (29.35%), Postives = 91/184 (49.46%), Query Frame = 0
Query:  108 HNEESRFLSIASVDSEEFPTRILTIAGVIPELTTAQFKSTPAVLTNKRPDKGNLVITKLPEHYHGDIMSLPGSEVLAGCGDPVLVLAEQSEVSATSLPISEG-----DLVALVVDRDMNRRTFESTNFYVWDVRGN--IRVGWAKEEPHPSQAECVGQVVFGIMEIKPDLRQKKSCWEEENETY 284
            H + S +L +  +D + +  RI+ IAG  P +T  +F +T +      P + N   +  P+      +++ GS V+A C DPV+++AE + +S   +P+ E      D+V LV DRD+NR  F    F V DV  +  I   +  +   P   E +GQ V   +   P ++  KS + E +E +
Sbjct:   41 HGDNSCYLPLKQLDQDYYGPRIVQIAGAYPGITREEFYATQSE-PPPEPGQWNYDFSD-PDGPQLGTVAIEGSNVVAVCEDPVVIIAEHTSLS---IPLPESIKEPVDIVVLV-DRDLNR--FAERKFLVLDVGEDALIIAAFPFKTDLPPNCEILGQAVLCQVPWLPSMKPTKSGFLEADEYF 216          
BLAST of Gchil4141.t1 vs. uniprot
Match: A0A7S4HS41_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HS41_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.240e-8
Identity = 49/181 (27.07%), Postives = 83/181 (45.86%), Query Frame = 0
Query:  108 HNEESRFLSIASVDSEEFPTRILTIAGVIPELTTAQFKSTPAVLTNKRPDKGNLVIT-KLPEHYHGDIMSLPGSEVLAGCGDPVLVLAEQSEVSATSLPISEGDLVALVVDRDMNRRTFESTNFYVWDVRGN---IRVGWAKEEPHPSQAECVGQVVFGIMEIKPDLRQKKSCWEEENETY 284
            H + S FL +  +D + +  RI+ IAG  P +T   F    AV +   P +G        P+      +++PGS  +A CGDP +++AE   +    LP +  D V L+V  D  + TF    F V ++ G    +   +  +   P   + +GQV    +   P ++  KS + E +E +
Sbjct:   60 HGDSSCFLPLTQLDQDYYAPRIVQIAGAYPGITAEDFF---AVTSEPSPPQGQWSYDFSDPDGPQIGTVAVPGSNKVAACGDPCVIIAEHPSIGV-ELPPAIKDPVDLIVLVDRAKATFAERVFLVVEIPGQEELVIAAYHTKADLPEGGKIMGQVELVQIPWLPSMKPTKSGFLEVDEYF 236          
The following BLAST results are available for this feature:
BLAST of Gchil4141.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J1L1_9FLOR2.010e-9254.72RuBisCo_chap_C domain-containing protein n=1 Tax=G... [more]
R7QT97_CHOCR2.560e-7444.80RuBisCo_chap_C domain-containing protein n=1 Tax=C... [more]
A0A2V3IG29_9FLOR6.420e-3138.89Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1E7FB03_9STRA3.700e-929.35RuBisCo_chap_C domain-containing protein n=1 Tax=F... [more]
A0A7S4HS41_9STRA1.240e-827.07Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 39..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..106
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..285
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
IPR040858Rubisco accumulation factor 1, C-terminalPFAMPF18087RuBisCo_chap_Ccoord: 120..261
e-value: 1.0E-9
score: 38.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:989310..990167 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4141.t1Gchil4141.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004373_pilon 989310..990167 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil4141.t1 ID=Gchil4141.t1|Name=Gchil4141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=286bp
MRPLTFVSFSSFTPGSHQQLRPNVVSQQSYGTRMVTPKHIRRSNEIKRLE
RQLEELRALREKLAHDKAHPISDSQPKPRADEPERAPPIPDLLSMPQKTA
SDFITGKHNEESRFLSIASVDSEEFPTRILTIAGVIPELTTAQFKSTPAV
LTNKRPDKGNLVITKLPEHYHGDIMSLPGSEVLAGCGDPVLVLAEQSEVS
ATSLPISEGDLVALVVDRDMNRRTFESTNFYVWDVRGNIRVGWAKEEPHP
SQAECVGQVVFGIMEIKPDLRQKKSCWEEENETYV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040858Raf1_C