Gchil4031.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil4031.t1
Unique NameGchil4031.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length197
Homology
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BLAST of Gchil4031.t1 vs. uniprot
Match: A0A2V3IRV5_9FLOR (Mediator of RNA polymerase II transcription subunit 11 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRV5_9FLOR)

HSP 1 Score: 254 bits (650), Expect = 1.240e-83
Identity = 135/197 (68.53%), Postives = 167/197 (84.77%), Query Frame = 0 
Query:    1 MVGQQQRVPSTAESLKKLTTAEEKILTFLTHATEAIRALSQTDAPDATLATAEAQAFLTNVHEVQSILRSQIETLTSDVPQENITMLRLVEADLALQRTAHVHRALAHVLRLFGEPVSGMPASAPSPPYMPSPVANTPVGLIGGIAPTPPAAGAPITIAVPSPDAGAASAQRSVQIGLNGGTAD-VADAQNADAMEM 196
            MVGQQQR+P TAESL+KL  AE+K+LTFL+ AT+A+RALS T++P  T AT  AQ  ++N+++VQ+ILR+QI+ L+SD+P E+ T LRLVEADLALQRTAHVHR+L H+L+LFGEP++GMP +APSPPYMPSPVANTPVGL+GG+APTPPAAGAPITIAVPSPD    + Q SVQ+GLNGG A+  A+  N DAMEM
Sbjct:    1 MVGQQQRLPPTAESLQKLRVAEQKVLTFLSQATDAVRALSNTESPQVTTATVHAQQVVSNLYDVQAILRNQIDALSSDMPLEDGTKLRLVEADLALQRTAHVHRSLVHILKLFGEPITGMPTTAPSPPYMPSPVANTPVGLVGGMAPTPPAAGAPITIAVPSPDGTTGTNQLSVQMGLNGGAAEGTAEPPNPDAMEM 197
The following BLAST results are available for this feature:
BLAST of Gchil4031.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IRV5_9FLOR1.240e-8368.53Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019404Mediator complex, subunit Med11PFAMPF10280Med11coord: 12..77
e-value: 6.1E-7
score: 30.0
NoneNo IPR availableGENE3D1.10.287.3490coord: 4..101
e-value: 9.8E-6
score: 27.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004373_piloncontigtig00004373_pilon:136911..137501 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4031.t1Gchil4031.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004373_pilon 136911..137501 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil4031.t1 ID=Gchil4031.t1|Name=Gchil4031.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=197bp
MVGQQQRVPSTAESLKKLTTAEEKILTFLTHATEAIRALSQTDAPDATLA
TAEAQAFLTNVHEVQSILRSQIETLTSDVPQENITMLRLVEADLALQRTA
HVHRALAHVLRLFGEPVSGMPASAPSPPYMPSPVANTPVGLIGGIAPTPP
AAGAPITIAVPSPDAGAASAQRSVQIGLNGGTADVADAQNADAMEM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019404Mediator_Med11