Gchil3801.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3801.t1
Unique NameGchil3801.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length317
Homology
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BLAST of Gchil3801.t1 vs. uniprot
Match: R7QK10_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK10_CHOCR)

HSP 1 Score: 275 bits (704), Expect = 9.250e-89
Identity = 158/279 (56.63%), Postives = 195/279 (69.89%), Query Frame = 0 
Query:   42 LGNVVAEGINARRYIGDSSGALEERKQMRNYIEAMKRKSTRVLHRAELYARSGHAAWPGIDPTITDPVSLAEEYVRVVENYEAVLSEEESRAKLVRAENVADADSG----AVKDLEITSEDWENADDLAYKKALKNERNDNEDSESARKRLLDTDEGPRRRKAAAGSSQVNRANLSKEDEELMARHQPIQDELTSNLVDLVGQLKESVTNNNKKLKKDSVVLDETEDAVDKNIAGITKHRSNLKQYGETTTVSWXXXXXXXXXXXXXXXXXXILMRIPI 316
            +GN++AEGI ARRY+GD + A  ERK MR YIEAMKRKS RVLHRAELYA+SGHA+WPGIDPTITDPVSLAEEYV VVENYEAVL EEESRAKLV+ + V   D      AV+ L +  EDWE ADD++Y++ LK E+    D++ ARK LL   +G RRRK   G  +    ++  +DEE MARHQPI+ ELTSNLV LVGQLK+S+  N  KL+KDS+VLDETE+ V KN+AG +K R  LK Y  + ++SW                  I+++IPI
Sbjct:    1 MGNLIAEGIQARRYVGDIASAEGERKLMREYIEAMKRKSMRVLHRAELYAKSGHASWPGIDPTITDPVSLAEEYVHVVENYEAVLMEEESRAKLVKEKVVGPGDDSREGEAVRKLAMEEEDWEAADDVSYRETLKREQVLTRDADDARKELLGESQGMRRRK---GGGRTVVGSIVLQDEEFMARHQPIEVELTSNLVGLVGQLKQSILANKGKLEKDSIVLDETEEVVYKNLAGTSKQREELKTYSNSFSISWWAMLVVALVMLFIFVLLVIVLKIPI 276
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BLAST of Gchil3801.t1 vs. uniprot
Match: A0A2V3J341_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J341_9FLOR)

HSP 1 Score: 202 bits (515), Expect = 5.090e-61
Identity = 114/173 (65.90%), Postives = 127/173 (73.41%), Query Frame = 0 
Query:    1 MTNALIPEAHLGGHNIGMASGSTTQKLEKDEVFWTELEIRRLGNVVAEGINARRYIGDSSGALEERKQMRNYIEAMKRKSTRVLHRAELYARSGHAAWPGIDPTITDPVSLAEEYVRVVENYEAVLSEEESRAKLVRAENVADADSGAVKDLEITSED-WENADDLAYKKALK 172
            M   L  E  +  +    ++     K EKDEVFWTELEIRRLGNVVAE IN++RY+GD   A EERK MR YIEAMKRKSTRVLHRAELYA+SGHA WPGIDPTI+DPVSLAEEYVRVVENYEAVLSEEESRAK   A+ V   D G V   E    D WE  DDLAY++AL+
Sbjct:    1 MVEVLKGEESVPENRATASAAKKISKREKDEVFWTELEIRRLGNVVAECINSKRYLGDEKAAKEERKLMRTYIEAMKRKSTRVLHRAELYAQSGHAQWPGIDPTISDPVSLAEEYVRVVENYEAVLSEEESRAKTTLAKTVHSDDFGDVARYENGKRDGWELEDDLAYQEALR 173
The following BLAST results are available for this feature:
BLAST of Gchil3801.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
R7QK10_CHOCR9.250e-8956.63Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3J341_9FLOR5.090e-6165.90Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 171..191
NoneNo IPR availableCOILSCoilCoilcoord: 112..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..199
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..213
NoneNo IPR availablePANTHERPTHR13050:SF7VESICLE TRANSPORT PROTEIN USE1coord: 112..315
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..288
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 289..311
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 312..316
NoneNo IPR availableTMHMMTMhelixcoord: 289..311
IPR019150Vesicle transport protein, Use1PFAMPF09753Use1coord: 113..314
e-value: 7.0E-22
score: 78.3
IPR019150Vesicle transport protein, Use1PANTHERPTHR13050USE1-LIKE PROTEINcoord: 112..315

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:466296..467246 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3801.t1Gchil3801.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000010_pilon 466296..467246 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3801.t1 ID=Gchil3801.t1|Name=Gchil3801.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=317bp
MTNALIPEAHLGGHNIGMASGSTTQKLEKDEVFWTELEIRRLGNVVAEGI
NARRYIGDSSGALEERKQMRNYIEAMKRKSTRVLHRAELYARSGHAAWPG
IDPTITDPVSLAEEYVRVVENYEAVLSEEESRAKLVRAENVADADSGAVK
DLEITSEDWENADDLAYKKALKNERNDNEDSESARKRLLDTDEGPRRRKA
AAGSSQVNRANLSKEDEELMARHQPIQDELTSNLVDLVGQLKESVTNNNK
KLKKDSVVLDETEDAVDKNIAGITKHRSNLKQYGETTTVSWWLMMIVTIV
ILVIFVLLVILMRIPI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019150Vesicle_transport_protein_Use1