Gchil3740.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3740.t1
Unique NameGchil3740.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length171
Homology
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BLAST of Gchil3740.t1 vs. uniprot
Match: A0A2V3J615_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J615_9FLOR)

HSP 1 Score: 113 bits (283), Expect = 9.150e-29
Identity = 74/159 (46.54%), Postives = 98/159 (61.64%), Query Frame = 0 
Query:    1 MTSSAP-VLLFTQSLPLSIWAASSYLHSSVRKTRLYTANPTRRRIFNTARNSKPQIRLTQVNRKQ-PQGSTDESEEEKQKDKSYALREFGKVSAGAILIGLVLFFFDILVSLVALSIGLVYAIAVLFEVRGADVLLTRIGNGASWLWSMARKGICRAWR 157
            +TS  P  LLF Q LP+ +  AS  +  S+R   L   NP R+R        +  ++L+   +   P    +  ++EKQ+DKSYALREF KV++GA LIG+VL F+D LVSL+ALSIGL+YAIAVLFEVRGAD LL R     + L +   KG+   WR
Sbjct:    2 ITSPQPHALLFAQPLPVKLRTASVSVQPSLRTPPLRACNPKRKRTSPLVIRPRATVQLSTGGKPDSPPPRAENEDDEKQRDKSYALREFTKVASGAFLIGVVLLFYDFLVSLIALSIGLIYAIAVLFEVRGADTLLNRCAASVTRLCTTTAKGLREGWR 160
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BLAST of Gchil3740.t1 vs. uniprot
Match: R7Q574_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q574_CHOCR)

HSP 1 Score: 82.8 bits (203), Expect = 6.640e-17
Identity = 53/127 (41.73%), Postives = 76/127 (59.84%), Query Frame = 0 
Query:   44 IFNTARNSKPQIRLTQVNRKQPQGSTDESEEEKQKDKSYALREFGKVSAGAILIGLVLFFFDILVSLVALSIGLVYAIAVLFEVRGADVLLTRIGNGASWLWSMARKGICRAWRXXXXXXKDVRKRL 170
            I    R+S P++ ++   +K+ +    + E   Q DK Y  REF K+SA ++ IG+VL F+D+L+SLVA+ IG VYAIAVL EVRGAD LL+R   G S  W    + +   +R      ++VRK L
Sbjct:   38 ISKRCRSSCPELSMSTEQKKKDKEFQSDEERRLQNDKKYMFREFAKISAASVGIGIVLLFYDMLISLVAVGIGSVYAIAVLLEVRGADTLLSRAVQGVSSAWRAFGRAVGDGYRAIR---REVRKGL 161
The following BLAST results are available for this feature:
BLAST of Gchil3740.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J615_9FLOR9.150e-2946.54Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q574_CHOCR6.640e-1741.73Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..77
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 92..125
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..91
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 126..170
NoneNo IPR availableTMHMMTMhelixcoord: 103..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:1099686..1100198 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3740.t1Gchil3740.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00025222_pilon 1099686..1100198 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3740.t1 ID=Gchil3740.t1|Name=Gchil3740.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=171bp
MTSSAPVLLFTQSLPLSIWAASSYLHSSVRKTRLYTANPTRRRIFNTARN
SKPQIRLTQVNRKQPQGSTDESEEEKQKDKSYALREFGKVSAGAILIGLV
LFFFDILVSLVALSIGLVYAIAVLFEVRGADVLLTRIGNGASWLWSMARK
GICRAWRAWRSWRKDVRKRL*
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