Gchil3613.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil3613.t1
Unique Name	Gchil3613.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	314

Homology

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BLAST of Gchil3613.t1 vs. uniprot
Match: A0A2V3J1J0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1J0_9FLOR)

HSP 1 Score: 140 bits (352), Expect = 8.760e-36
Identity = 115/320 (35.94%), Postives = 165/320 (51.56%), Query Frame = 0

Query:    1 MGQQPSQDTSASETKEDKRLSQESSNDSYATRLAGSFYGDYSDSQEKQFNRPVLNTVVELDTATQLENGSPQPRF-PRRSESRVSPLSTGGIASAIRQ--NEMAVSDIEDETKEGVSVKSSRGRRPPLPRKGFQTTVHPNNSPYKSPPISHSQTLTDHAP--------RILPSGLKPPRPQPRIASLPSLESNSPASTPPGTPRRRSDDSFATSKEATVSASGMTPXXXXXXXXXXXXNDVEAPLKTDEISGKRRYQKPLSYRKTMLLGFGLTAFIGPFSVLVPVFWREYRQRKSFASFGIGALSALVVWLAFSIVLALV 309
            MGQ   Q  +AS++KE K  S +SS DS  TR+A    G   DS E+      L    E   +       P+PR  P + E+   PLS+ G    + Q  N    S   D+ ++GV  ++S+ +RP           HP+ +  +S P +  ++    +P        RI  SGLKPPRPQPRIA +P + +NSP+S+  G+     +   +   E+ +  S +               D EAP     I  K + +K  S  +TML+GFGLTA +GP S+LVPVFW +YR+RK+FA+F IG LSAL  WL F+I+LA+V
Sbjct:    1 MGQD--QSVAASKSKEPKPFSTDSSEDSNETRIAKDDQGKVDDSIERS-----LLPSKETGKSKPFPIEPPKPRVKPLQPEA---PLSSSGSEVVLGQIENRSDASRERDDLEDGVPTRNSKTKRP-----------HPSTT-LRSKPHAFGRSDVSKSPLADVILRSRIPASGLKPPRPQPRIAPMPPI-ANSPSSSFSGSSSAGEEGEPSKEYESVIPMSDVASPAPTPPGTPDRQADEEAPFDRTPIPSKTK-RKARSSARTMLVGFGLTAVVGPVSLLVPVFWPKYRERKTFAAFVIGVLSALSAWLVFAIILAIV 296

The following BLAST results are available for this feature:

BLAST of Gchil3613.t1 vs. uniprot

BLAST of Gchil3613.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J1J0_9FLOR	8.760e-36	35.94	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..94
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 312..313
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 277..287
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 254..276
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..253
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 288..311
None	No IPR available	TMHMM	TMhelix		coord: 289..311
None	No IPR available	TMHMM	TMhelix		coord: 254..276

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025222_pilon	contig	tig00025222_pilon:88086..89027 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3613.t1	Gchil3613.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00025222_pilon 88086..89027 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil3613.t1 ID=Gchil3613.t1|Name=Gchil3613.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=314bp
MGQQPSQDTSASETKEDKRLSQESSNDSYATRLAGSFYGDYSDSQEKQFN
RPVLNTVVELDTATQLENGSPQPRFPRRSESRVSPLSTGGIASAIRQNEM
AVSDIEDETKEGVSVKSSRGRRPPLPRKGFQTTVHPNNSPYKSPPISHSQ
TLTDHAPRILPSGLKPPRPQPRIASLPSLESNSPASTPPGTPRRRSDDSF
ATSKEATVSASGMTPPAPTPPQTPDRQNDVEAPLKTDEISGKRRYQKPLS
YRKTMLLGFGLTAFIGPFSVLVPVFWREYRQRKSFASFGIGALSALVVWL
AFSIVLALVLVKQ*