Gchil3087.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3087.t1
Unique NameGchil3087.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length1142
Homology
BLAST of Gchil3087.t1 vs. uniprot
Match: A0A2V3IWX4_9FLOR (Putative RING finger protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWX4_9FLOR)

HSP 1 Score: 622 bits (1605), Expect = 1.300e-208
Identity = 324/383 (84.60%), Postives = 344/383 (89.82%), Query Frame = 0
Query:  605 RAAARIAPNPTASL-TPAAPPILAGGVEKRRAGKYTHPFGGMRQFAEDRAAHSGWDHDCLTISNDEQRRETRSQLAEKISELYKEEFIRVNKAQGKGRPKANNISAAKKTVRMIAERILLSLEARAQAALYKRLMDNRQECEKELQKLRHLHKLGNENPKLSYDEIRSIARSRLPHHADAPSSPIPLMTNDGTETPDMESAEAEAEIEAMKQAIIEMRADEVAKGYKPKLLNDRWVERMMQASRRLVHETYSRQYVPRTKVFGCKHFTRKNRIQMVCCGTFPVCRMCHIQDVSRIHDVRIEPVQTMLCMMCGEVQPKTQHCRKCGECFGSYYCDICGITDDTPGYDLRHCNKCNVCMPGLTFXXXXXXXXXXXXXXXSAVCPG 986
            RAA RIAPNP A L T + PPIL+GGVEKRRAGKYTHPFGGMRQFAEDRAA SGWD+DCL I N EQRR  RS LAEKIS++YKEEF+RVNKAQGKGRPKANNISAAKKTVRMIAERILLSLEARA   L+K+LM+NRQECEKEL KLRHLHKLGNENPKLSYDEIRSIAR+RL H +D  +SPIPL++ D  +  D+ESAEA+AE+EAMKQAIIEMRADEVAKGYKPKLLNDRWVERM  A +RLVHETYSRQYVPRTKVFGCKHFTRKNRIQMVCCGTFPVCRMCHIQD+SRIHDVRIEPVQTMLCMMCGEVQPKTQ CRKC  CFGSYYCDICGITDDTPGYDLRHCNKCNVCMPGLTFXXXXXXXXXX      AVC G
Sbjct:   65 RAAPRIAPNPAAPLATSSTPPILSGGVEKRRAGKYTHPFGGMRQFAEDRAARSGWDNDCLAIDNHEQRRVARSHLAEKISDMYKEEFVRVNKAQGKGRPKANNISAAKKTVRMIAERILLSLEARATQNLFKQLMENRQECEKELNKLRHLHKLGNENPKLSYDEIRSIARARLSHTSDVTNSPIPLVSTDCNDPTDIESAEADAEVEAMKQAIIEMRADEVAKGYKPKLLNDRWVERMTHACKRLVHETYSRQYVPRTKVFGCKHFTRKNRIQMVCCGTFPVCRMCHIQDMSRIHDVRIEPVQTMLCMMCGEVQPKTQRCRKCDVCFGSYYCDICGITDDTPGYDLRHCNKCNVCMPGLTFXXXXXXXXXXATPEHDAVCTG 447          
BLAST of Gchil3087.t1 vs. uniprot
Match: R7Q774_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q774_CHOCR)

HSP 1 Score: 296 bits (757), Expect = 3.230e-89
Identity = 145/178 (81.46%), Postives = 159/178 (89.33%), Query Frame = 0
Query:  813 MKQAIIEMRADEVAKGYKPKLLNDRWVERMMQASRRLVHETYSRQYVPRTKVFGCKHFTRKNRIQMVCCGTFPVCRMCHIQDVSRIHDVRIEPVQTMLCMMCGEVQPKTQHCRKCGECFGSYYCDICGITDDTPGYDLRHCNKCNVCMPGLTFXXXXXXXXXXXXXXXSAVCPGATGA 990
            +KQAI+EMRADEVAKG+ PKLLN RWVER+  A ++LV E+YSRQ+VPRTKV+GCKHFTRKNRI MVCCGTFPVCRMCHIQD +RIHDVRIEPV+TMLCMMCGEVQPKTQ+CR C ECFGSYYCD+CGITDDTPGYDLRHCNKCNVCMPGLTFXXXXXXXXXXX     A+C G   A
Sbjct:    2 IKQAIVEMRADEVAKGFTPKLLNSRWVERVTTACKKLVQESYSRQFVPRTKVYGCKHFTRKNRILMVCCGTFPVCRMCHIQDRNRIHDVRIEPVRTMLCMMCGEVQPKTQNCRNCNECFGSYYCDVCGITDDTPGYDLRHCNKCNVCMPGLTFXXXXXXXXXXXTPDHDAICSGGQDA 179          
BLAST of Gchil3087.t1 vs. uniprot
Match: A0A2V3IU58_9FLOR (Protein RKD1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IU58_9FLOR)

HSP 1 Score: 171 bits (433), Expect = 8.920e-40
Identity = 127/265 (47.92%), Postives = 155/265 (58.49%), Query Frame = 0
Query:    1 MCGIVGCDCYLNGGVSSHNFHLPIPRIPQPPAVVQPPNQPSMSAPMS-AAAPPFYGPASMPYAFASPFSYTAAPPGAFHNMVQVNVMEQ-MYPHHHASPSGDAAVPVQNVNNGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAQSKGAAAAVLNAAGANSMQPAVVPVQSSANCSPPLNGYDMYASTHVNMGSQPP--NNVVYGAFGAHGQVGADSAAMMPPSDASGTHAPAPQQLWAEMAHSSNAGIVNMYNQ 261
            MCG+VGCDCYLNGGVSSHN+HLP+PR  QP  ++ P NQP++SAP++ AAAP FYG  +MPYAFA PF Y+AA PGAFHNMVQVNVMEQ +YPHH ++ SG    P  +VNN A                  XXXXXXXXXXXXXXXX    +         ++   G+ S   A     +  N      G   +A T  + G      N +VYGAFG HG +G     M   ++     A A Q  WAEM+HS N G+VNMY Q
Sbjct:  279 MCGMVGCDCYLNGGVSSHNYHLPLPRAAQPTTLLPPTNQPTVSAPLTTAAAPQFYGAPAMPYAFAPPFPYSAAAPGAFHNMVQVNVMEQQLYPHHASAASG---TPSHSVNNAAGVAGMGSQAPNGVQAGSGXXXXXXXXXXXXXXXXGRAGSRNG------IVGGGGSTSTPMAQTGYDTYRN------GCTAHAQTDGSAGGSAAQVNGIVYGAFGTHGGMGGMDGMMNGAANGRMHLAGASQHAWAEMSHSGNGGLVNMYAQ 528          
BLAST of Gchil3087.t1 vs. uniprot
Match: A0A3G5A594_9VIRU (Zinc-finger and zinc-ribbon domain protein n=1 Tax=Homavirus sp. TaxID=2487769 RepID=A0A3G5A594_9VIRU)

HSP 1 Score: 86.3 bits (212), Expect = 2.730e-14
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = 0
Query:  865 FGCKHFTRKNRIQMVCCGTFPVCRMCHIQD-------VSRIHDVRIEPVQTMLCMMCGEVQPKTQHCRKCGECFGSYYCDICGITDDTPGYDLRHCNKCNVCMPG 962
            +GCKH+ R+ ++   CC     CR+CH +D       +++ H++    V  ++C  C + Q   Q+C  C  CFGSY+C IC + DDT      HC+KC +C  G
Sbjct:   92 YGCKHYLRRCKLVAPCCNKIYYCRLCHDEDQNGDDIPINKRHNLDRFAVTHIVCTNCDKEQDINQYCENCNTCFGSYFCKICRLFDDT-NKGQYHCDKCGICRIG 195          
BLAST of Gchil3087.t1 vs. uniprot
Match: R7QJV3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJV3_CHOCR)

HSP 1 Score: 86.7 bits (213), Expect = 1.130e-13
Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 0
Query:  852 ETYSRQYVPRT--KVFGCKHFTRKNRIQMVCCGTFPVCRMCHIQDVSRIHDVRIEPVQTMLCMMCGEVQPKTQHC--RKCGECFGSYYCDICGITDDTPGYDLRHCNKCNVCMPG 962
            +TYS    P T  K+ GC+H+ R  +I+  CCG + VCR+CH    S  H +     Q ++CM C   QP ++ C   +C   F  Y+C  C   D+TPG ++ HC+KC +C  G
Sbjct:  255 KTYSNVDHPNTGEKMPGCEHYPRNCKIKADCCGLWVVCRLCH-DHPSVDHAIVRFDTQEVMCMFCLTEQPVSRRCMNEECNREFARYFCAKCKFYDNTPGKNIYHCDKCQICRVG 368          
BLAST of Gchil3087.t1 vs. uniprot
Match: R7QHE9_CHOCR (RWP-RK domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHE9_CHOCR)

HSP 1 Score: 66.6 bits (161), Expect = 2.810e-7
Identity = 51/120 (42.50%), Postives = 58/120 (48.33%), Query Frame = 0
Query:    1 MCGIVGCDCYLNGGVSSHNFHLPIPRIPQPPA------VVQPPNQPSMSAPMSAAAPP-FYG--PASMPYAFASPFSYTAAPPGA------------------FHNMVQVNVMEQM-YPH 92
             CG +GCDC +NGGVSS  +HLP  R P PPA        Q P QP+ S  +    PP FYG  P+  PY      SY   PP                    FHNMVQVNV+EQ  YPH
Sbjct:  213 FCGAMGCDCCVNGGVSSQGYHLPFVRQPMPPASSNSSRAPQKP-QPNPSGXVXXPGPPQFYGIPPSQYPYV-----SYPPQPPXXXXXXXXXXXXXXXXXQPPFHNMVQVNVLEQQPYPH 326          
The following BLAST results are available for this feature:
BLAST of Gchil3087.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IWX4_9FLOR1.300e-20884.60Putative RING finger protein n=1 Tax=Gracilariopsi... [more]
R7Q774_CHOCR3.230e-8981.46Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3IU58_9FLOR8.920e-4047.92Protein RKD1 n=1 Tax=Gracilariopsis chorda TaxID=4... [more]
A0A3G5A594_9VIRU2.730e-1435.24Zinc-finger and zinc-ribbon domain protein n=1 Tax... [more]
R7QJV3_CHOCR1.130e-1337.39Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QHE9_CHOCR2.810e-742.50RWP-RK domain-containing protein n=1 Tax=Chondrus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 803..823
NoneNo IPR availableCOILSCoilCoilcoord: 734..754
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 370..390
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 407..455
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 287..323
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 340..369
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 577..614
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1019..1038
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 259..476
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1048..1120
NoneNo IPR availablePANTHERPTHR21319:SF0ZINC FINGER PROTEIN BRUTUScoord: 720..984
NoneNo IPR availablePANTHERPTHR21319RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1coord: 720..984
IPR008913Zinc finger, CHY-typePFAMPF05495zf-CHYcoord: 867..940
e-value: 8.5E-13
score: 48.6
IPR008913Zinc finger, CHY-typePROSITEPS51266ZF_CHYcoord: 860..929
score: 15.912701
IPR017921Zinc finger, CTCHY-typePROSITEPS51270ZF_CTCHYcoord: 931..992
score: 12.301735
IPR037275Zinc finger, CTCHY-type superfamilySUPERFAMILY161245Zinc hairpin stackcoord: 932..981
IPR037274Zinc finger, CHY-type superfamilySUPERFAMILY161219CHY zinc finger-likecoord: 861..931

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:31222..35999 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3087.t1Gchil3087.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004382_pilon 31222..35999 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3087.t1 ID=Gchil3087.t1|Name=Gchil3087.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=1142bp
MCGIVGCDCYLNGGVSSHNFHLPIPRIPQPPAVVQPPNQPSMSAPMSAAA
PPFYGPASMPYAFASPFSYTAAPPGAFHNMVQVNVMEQMYPHHHASPSGD
AAVPVQNVNNGATNNNSSNNKNNNNNNKKKNNNKDNKNSSSTVNHNSNSG
NAQSKGAAAAVLNAAGANSMQPAVVPVQSSANCSPPLNGYDMYASTHVNM
GSQPPNNVVYGAFGAHGQVGADSAAMMPPSDASGTHAPAPQQLWAEMAHS
SNAGIVNMYNQNNHHHHHHHHSTDSGGKPIKNDGGGGKTLSSATNQSNQS
NGSNGANARTEVGVSNGTDRAATTTDRWHARHARSKRQNVRVQNGHGQNG
RMGSTARVATTADTVHQTQRDMKGVQKDRMQVESARGTERQERQLLATIG
LERGKSEEQTMTVREDGRKQSDGKTDRTKGSSSVKRARASRVREEEEEEE
ARKGVDMASANGLRIEGGESGESGKRQGEYEVKAADAHAHTLGMQVRAAC
GRAAAKRRRNNVVVESDSKGELDKHNWQGRPPLASPVSVLDTPLAPPLPN
VCNAADTHTRRSRHHCARKCVLQPLHHHHPTHHSQPLPHLPTHLSSSHHA
LQHARAAARIAPNPTASLTPAAPPILAGGVEKRRAGKYTHPFGGMRQFAE
DRAAHSGWDHDCLTISNDEQRRETRSQLAEKISELYKEEFIRVNKAQGKG
RPKANNISAAKKTVRMIAERILLSLEARAQAALYKRLMDNRQECEKELQK
LRHLHKLGNENPKLSYDEIRSIARSRLPHHADAPSSPIPLMTNDGTETPD
MESAEAEAEIEAMKQAIIEMRADEVAKGYKPKLLNDRWVERMMQASRRLV
HETYSRQYVPRTKVFGCKHFTRKNRIQMVCCGTFPVCRMCHIQDVSRIHD
VRIEPVQTMLCMMCGEVQPKTQHCRKCGECFGSYYCDICGITDDTPGYDL
RHCNKCNVCMPGLTFHCDRCKSCVPATPEHSAVCPGATGAAAAASAVGAT
AGAGGAASGAHVGVGGGSGRLATPTGGEGSASGGGGAAGGGGIGGNSGVA
SGSGGADGRDGGGGSGGSGGGGGGGGGGGGGGGGGGGGGGGDTALSAGGG
VAPRAQNVHVNGMTGGTDALDQTMEQLAGVETRGGQLFSGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008913Znf_CHY
IPR017921Znf_CTCHY
IPR037275Znf_CTCHY_sf
IPR037274Znf_CHY_sf