Gchil2836.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil2836.t1
Unique NameGchil2836.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length192
Homology
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BLAST of Gchil2836.t1 vs. uniprot
Match: A0A2V3J6H0_9FLOR (Sen15 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6H0_9FLOR)

HSP 1 Score: 192 bits (488), Expect = 6.720e-59
Identity = 102/175 (58.29%), Postives = 131/175 (74.86%), Query Frame = 0 
Query:   17 PLSSYQAFLKSNNVSDNENSELLYQVYQDLLRIRKWTNLRVCHGAPRVYLAGTSALAFDSVFGGSGGSEAQLGDRTQAVIPLSAWETLSPDEMHALCDDCVHPESGEKLRCVTLAIVDDDSTTAYYRMVNTWEEIVDARWKSTKV-KTEEGGGTEERDESKVLEESDSSPCVDSD 190
            P+ S+ +FL SN + D + +++LYQV+QDL  IRKWT LRV   A R YLAG++A AFDSV+      + +  DRTQ V+P+SAWE LS  ++ ALC +CVHPE+GE+LRC+TLAIVDDDSTTAYYR+ +TWEEIV  +WK  K  KTE G GTEERD++ V+EES+SS   DSD
Sbjct:   39 PIQSFMSFLISNGLQDCDQAQVLYQVFQDLRLIRKWTGLRVSQRASRPYLAGSAAAAFDSVYKDKDMDKGE--DRTQVVVPVSAWEELSALDLQALCRECVHPETGEQLRCMTLAIVDDDSTTAYYRIFSTWEEIVHPQWKMKKKHKTEGGIGTEERDQNDVVEESESSSNSDSD 211
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BLAST of Gchil2836.t1 vs. uniprot
Match: R7QIT3_CHOCR (Sen15 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIT3_CHOCR)

HSP 1 Score: 88.6 bits (218), Expect = 1.360e-19
Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = 0 
Query:   96 IPLSAWETLSPDEMHALCDDCVHPESGEKLRCVTLAIVDDDSTTAYYRMVNTWEEIVDARWKSTKVKTEE---GGGTEER 172
            +P+S  E LSP ++  LC  C+HPE+G+KLRC+T+AIVDDDSTTAYYR+ +++ EIV  +WK  K +T+      GTEE+
Sbjct:    1 MPMSIQEKLSPFKLKELCRACIHPETGKKLRCMTVAIVDDDSTTAYYRIFDSFAEIVHPQWKQKKKRTKNEDVANGTEEK 80
The following BLAST results are available for this feature:
BLAST of Gchil2836.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J6H0_9FLOR6.720e-5958.29Sen15 domain-containing protein n=1 Tax=Gracilario... [more]
R7QIT3_CHOCR1.360e-1952.50Sen15 domain-containing protein n=1 Tax=Chondrus c... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018593tRNA-splicing endonuclease subunit Sen15PFAMPF09631Sen15coord: 41..147
e-value: 9.7E-14
score: 51.6
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 19..145
e-value: 2.9E-16
score: 61.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..183
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 20..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:866447..867022 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2836.t1Gchil2836.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004406_pilon 866447..867022 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil2836.t1 ID=Gchil2836.t1|Name=Gchil2836.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=192bp
MEEQNQTHGSETDTFQPLSSYQAFLKSNNVSDNENSELLYQVYQDLLRIR
KWTNLRVCHGAPRVYLAGTSALAFDSVFGGSGGSEAQLGDRTQAVIPLSA
WETLSPDEMHALCDDCVHPESGEKLRCVTLAIVDDDSTTAYYRMVNTWEE
IVDARWKSTKVKTEEGGGTEERDESKVLEESDSSPCVDSDD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018593tRNA-endonuc_su_Sen15
IPR011856tRNA_endonuc-like_dom_sf
IPR036167tRNA_intron_Endo_cat-like_sf