Gchil2532.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil2532.t1
Unique Name	Gchil2532.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	166

Homology

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BLAST of Gchil2532.t1 vs. uniprot
Match: A0A2V3J0F6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0F6_9FLOR)

HSP 1 Score: 233 bits (594), Expect = 4.200e-76
Identity = 112/165 (67.88%), Postives = 133/165 (80.61%), Query Frame = 0

Query:    1 MAKKAVTKVLGLALDIIQLACALVVMVITVWRLLDINRDGLDFQSKCLLDGSGLEGTFTGAQFCGYVIAVGALSLLFNFIVGCARNIFKCFTAGACGASRVVSIVGDAVLTVWWGIAFYFVVRRGVSANNLDWPERAARDGVIGATFGAAAAFALDVIVGFFSFA 165
            MAKKA TKVL LALDIIQ+ACAL V+V T WRL++++R+GL F + CLLDGSG  G FTG QFC YVIAV  +SL+FN +VGCARNI KC T G CG+SR++SI+GD  L VWW +AFYFVVRRG +ANNL WPE+AARDGVI ATFGA AA+  D++VGF S A
Sbjct:    1 MAKKATTKVLSLALDIIQIACALCVIVFTSWRLINVDREGLKFDTDCLLDGSGRTGAFTGGQFCAYVIAVAVISLVFNALVGCARNICKCITIGGCGSSRLISIIGDTALVVWWAVAFYFVVRRGTAANNLGWPEKAARDGVIAATFGAMAAYFADIVVGFCSLA 165

The following BLAST results are available for this feature:

BLAST of Gchil2532.t1 vs. uniprot

BLAST of Gchil2532.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J0F6_9FLOR	4.200e-76	67.88	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 101..122
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 142..164
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..34
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 82..100
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 165..165
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 123..141
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 35..59
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 60..81
None	No IPR available	TMHMM	TMhelix		coord: 100..122
None	No IPR available	TMHMM	TMhelix		coord: 142..164
None	No IPR available	TMHMM	TMhelix		coord: 58..80
None	No IPR available	TMHMM	TMhelix		coord: 9..31

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:1507658..1508155 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2532.t1	Gchil2532.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004400_pilon 1507658..1508155 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil2532.t1 ID=Gchil2532.t1|Name=Gchil2532.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=166bp
MAKKAVTKVLGLALDIIQLACALVVMVITVWRLLDINRDGLDFQSKCLLD
GSGLEGTFTGAQFCGYVIAVGALSLLFNFIVGCARNIFKCFTAGACGASR
VVSIVGDAVLTVWWGIAFYFVVRRGVSANNLDWPERAARDGVIGATFGAA
AAFALDVIVGFFSFA*