Gchil2383.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil2383.t1
Unique NameGchil2383.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length260
Homology
BLAST of Gchil2383.t1 vs. uniprot
Match: A0A2V3IL73_9FLOR (Exosome complex component RRP41 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL73_9FLOR)

HSP 1 Score: 474 bits (1220), Expect = 2.060e-168
Identity = 238/259 (91.89%), Postives = 248/259 (95.75%), Query Frame = 0
Query:    1 MAPPFKRGRGGGAGGLEYISLDGLRIDGRLPNEVRKIRCALGALSRADGSAYYEQGNTRVLAAVYGPREPTGRDFEHDKAIVKCEFSTAMFASTARRRTWKGDRKSTAAALLVQRLFEGVILLTEYPRCQIDIYIQVLQNDGGTLVAAVNAACLALINAGVAMSDFVVACSVGYVENTFVADPNSLESASDRPELILAITPHSGKICSCQLASKLPDNSSFASAMQYATAGAKQIFQVLEYEVKKYSVGLLDSRGMVAL 259
            MAPP KRGRGGGA GLEYISLDGLR+DGRL  EVRKIRC+LG LSRADGSAYYEQGNTRVLAAVYGPREPTGRDFEHDKAIVKCEFSTAMFASTARRRTWKGDRKSTAAA++VQRLFEGVILL EYPRCQIDIY+QVLQNDGGTLVAAVNAACLALINAGVAMSD+VVACSVGYV+NTFVADPNSLES SDRPEL LAITPHSGKICSCQL SKL D++SF SAMQYATAGAKQIFQVLEYEVKKYS+GLLDSRGMVAL
Sbjct:    1 MAPPPKRGRGGGARGLEYISLDGLRVDGRLHTEVRKIRCSLGTLSRADGSAYYEQGNTRVLAAVYGPREPTGRDFEHDKAIVKCEFSTAMFASTARRRTWKGDRKSTAAAIVVQRLFEGVILLAEYPRCQIDIYVQVLQNDGGTLVAAVNAACLALINAGVAMSDYVVACSVGYVDNTFVADPNSLESGSDRPELTLAITPHSGKICSCQLVSKLADDASFESAMQYATAGAKQIFQVLEYEVKKYSLGLLDSRGMVAL 259          
BLAST of Gchil2383.t1 vs. uniprot
Match: R7Q565_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q565_CHOCR)

HSP 1 Score: 395 bits (1016), Expect = 2.750e-137
Identity = 201/262 (76.72%), Postives = 225/262 (85.88%), Query Frame = 0
Query:    1 MAPPFKRGR--GGGAGGLEYISLDGLRIDGRLPNEVRKIRCALGALSRADGSAYYEQGNTRVLAAVYGPREPTGR-DFEHDKAIVKCEFSTAMFASTARRRTWKGDRKSTAAALLVQRLFEGVILLTEYPRCQIDIYIQVLQNDGGTLVAAVNAACLALINAGVAMSDFVVACSVGYVENTFVADPNSLESASDRPELILAITPHSGKICSCQLASKLPDNSSFASAMQYATAGAKQIFQVLEYEVKKYSVGLLDSRGMVAL 259
            M P  KR R  GGGAGGLEYISLDGLRIDGR P EVRKIRC+LGALSRADGSAYYEQGNTRVL AVYGPREP  R   +HD+A+VKCEFSTAMFAS   RRTWKGDRKSTAAAL++Q+ FEGVIL   YP+ QIDIY+QVLQNDGG LVAA+NAA LAL+NAGVAMSDFVVACSVG+V++TFV DP+SLESASDRPEL LA+  HS KI SCQL SKLPD  SF  A+++AT+GA QIF+VLEYEV+KYS+ LLDSRG+VAL
Sbjct:    1 MPPATKRSRSRGGGAGGLEYISLDGLRIDGRRPTEVRKIRCSLGALSRADGSAYYEQGNTRVLVAVYGPREPHSRASIQHDRAVVKCEFSTAMFASPVYRRTWKGDRKSTAAALVMQKAFEGVILTASYPKSQIDIYVQVLQNDGGALVAAINAASLALVNAGVAMSDFVVACSVGFVDDTFVVDPSSLESASDRPELTLAVLSHSAKIASCQLDSKLPDGESFERALEFATSGANQIFKVLEYEVRKYSLNLLDSRGLVAL 262          
BLAST of Gchil2383.t1 vs. uniprot
Match: A0A7S1G3R3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G3R3_9STRA)

HSP 1 Score: 237 bits (604), Expect = 6.520e-75
Identity = 118/243 (48.56%), Postives = 175/243 (72.02%), Query Frame = 0
Query:   16 LEYISLDGLRIDGRLPNEVRKIRCALGALSRADGSAYYEQGNTRVLAAVYGPREPTGR-DFEHDKAIVKCEFSTAMFASTARRRTWKGDRKSTAAALLVQRLFEGVILLTEYPRCQIDIYIQVLQNDGGTLVAAVNAACLALINAGVAMSDFVVACSVGYVENTFVADPNSLESASDRPELILAITPHSGKICSCQLASKLPDNSSFASAMQYATAGAKQIFQVLEYEVKKYSVGLLDSRGMV 257
            +E++SL GLR+DGR P EVRK+RC +G   RADGSAY EQGNT+ +A VYGP++ T R D  HD+A V CEFSTA FA + R++    DR++  A+L++++ FEGVI    YPR QIDI++QVLQ DGG   AA+N A LALI+AG+AM DFVVAC+ G++++T + D NS+E+    P + +A+ P +GK+ + Q+ S+LP +  F + ++ A +G + IF VL+  V+++++  LD+RG++
Sbjct:    4 VEFVSLAGLRVDGRRPAEVRKLRCRMGLFGRADGSAYLEQGNTKAVAVVYGPKQITRRADALHDRASVNCEFSTAPFAGSERKKVRASDRRAAEASLMLKQTFEGVIQRHLYPRSQIDIFVQVLQADGGERAAAINVATLALIDAGIAMDDFVVACTAGFLDDTALLDLNSVETGPGGPRVEVAMVPQTGKLTAVQMESRLPVDH-FEAVLELALSGCRHIFDVLQAAVREHTLKRLDTRGVL 245          
BLAST of Gchil2383.t1 vs. uniprot
Match: R7Q6U6_CHOCR (Exosome component 4-like Rrp41-like (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6U6_CHOCR)

HSP 1 Score: 226 bits (576), Expect = 2.630e-71
Identity = 114/159 (71.70%), Postives = 132/159 (83.02%), Query Frame = 0
Query:   90 MFASTARRRTWKGDRKSTAAALLVQRLFEGVILLTEYPRCQIDIYIQVLQNDGGTLVAAVNAACLALINAGVAMSDFVVACSVGYVENTFVADPNSLESASDRPELILAITPHSGKICSCQLASKLPDNSSFASAMQYATAGAKQIFQVLEYEVKKYSV 248
            MFAS   R TWKGD KSTAAAL++Q+ FEGVIL   YP+ QIDIY+QVLQNDGG LVA VNAA LAL+N GVAMSDFVVAC VG+V++TFV DP+SLESASDRPEL LA+  HS KI SCQL SKLPD  SF  A+++AT+GA QIF+VLEYEV+KYS+
Sbjct:    1 MFASPVYRSTWKGDGKSTAAALVMQKAFEGVILTAPYPKSQIDIYLQVLQNDGGALVATVNAASLALVNVGVAMSDFVVACGVGFVDDTFVVDPSSLESASDRPELTLAVLSHSAKIASCQLDSKLPDGESFERALEFATSGANQIFKVLEYEVRKYSL 159          
BLAST of Gchil2383.t1 vs. uniprot
Match: D2VEP3_NAEGR (Predicted protein n=2 Tax=Naegleria TaxID=5761 RepID=D2VEP3_NAEGR)

HSP 1 Score: 227 bits (578), Expect = 5.800e-71
Identity = 113/242 (46.69%), Postives = 170/242 (70.25%), Query Frame = 0
Query:   16 LEYISLDGLRIDGRLPNEVRKIRCALGALSRADGSAYYEQGNTRVLAAVYGPREPTGRD-FEHDKAIVKCEFSTAMFASTARRRTWKGDRKSTAAALLVQRLFEGVILLTEYPRCQIDIYIQVLQNDGGTLVAAVNAACLALINAGVAMSDFVVACSVGYVENTFVADPNSLESASDRPELILAITPHSGKICSCQLASKLPDNSSFASAMQYATAGAKQIFQVLEYEVKKYSVGLLDSRGM 256
            +EYIS +GLR+DGR  +E+R I+  L   SRADGSAYYEQGNTRVLAAVYGPRE   +   ++D+AI+ CE+S A F++  R+R +K DR+ST  ++++++ FE VIL   YPR QIDI++QVLQ DGGT  A +NAA LAL++AG+ M DFVV+C+ G+++ + + D N +E  +  P++ +A+ P   K+   Q+ SKL     F   +++A  G KQI +V++ ++KK++  L++ RG+
Sbjct:    5 IEYISPEGLRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAIINCEYSMATFSTGERKRQFKKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVLQADGGTRCACINAATLALLDAGIPMKDFVVSCAAGFIQGSPLTDLNYIEDCAGGPDVPIALLPKHDKVTLLQMDSKL-SLDQFEKVLEHAIEGCKQIHKVIDEQLKKHTYALVNKRGL 245          
BLAST of Gchil2383.t1 vs. uniprot
Match: A0A8J4PXM0_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PXM0_9MYCE)

HSP 1 Score: 224 bits (570), Expect = 8.550e-70
Identity = 121/243 (49.79%), Postives = 163/243 (67.08%), Query Frame = 0
Query:   16 LEYISLDGLRIDGRLPNEVRKIRCALGALSRADGSAYYEQGNTRVLAAVYGPREPT-GRDFEHDKAIVKCEFSTAMFASTARRRTWK---GDRKSTAAALLVQRLFEGVILLTEYPRCQIDIYIQVLQNDGGTLVAAVNAACLALINAGVAMSDFVVACSVGYVENTFVADPNSLESASDRPELILAITPHSGKICSCQLASKLPDNSSFASAMQYATAGAKQIFQVLEYEVKKYSVGLLDSR 254
            L YIS +GLR+DGR PNE+R+I   +  L RADGSAYYEQGNT+++AAVYGPRE         D+AIV CEFS + F++T R++ +K   GDR++T A+ L+++ FE  I    YPR QIDIYIQVLQ+DGG   AA+NAA LALI+AGV+M DFV ACS   ++   V D N +E  S  P+ +L+I P  G + S  + SK+  +  F S ++  T G ++IF +L  EVKKYS  LL ++
Sbjct:    4 LSYISPEGLRVDGRRPNEIRRINVKMNILGRADGSAYYEQGNTKIIAAVYGPREIVHNTKAMFDRAIVNCEFSVSSFSTTERKQQFKTSRGDRQTTEASNLIKQAFESTIHTHLYPRSQIDIYIQVLQSDGGLKAAAINAATLALIDAGVSMKDFVCACSTSCIDGIPVLDLNHIEERSGGPDCLLSIQPQLGGVISLNMDSKVSQDL-FESVLELGTQGCQKIFDILSLEVKKYSSELLKNK 245          
BLAST of Gchil2383.t1 vs. uniprot
Match: R7QBW5_CHOCR (Exosome component 4-like Rrp41-like (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBW5_CHOCR)

HSP 1 Score: 223 bits (569), Expect = 3.010e-69
Identity = 114/159 (71.70%), Postives = 130/159 (81.76%), Query Frame = 0
Query:   90 MFASTARRRTWKGDRKSTAAALLVQRLFEGVILLTEYPRCQIDIYIQVLQNDGGTLVAAVNAACLALINAGVAMSDFVVACSVGYVENTFVADPNSLESASDRPELILAITPHSGKICSCQLASKLPDNSSFASAMQYATAGAKQIFQVLEYEVKKYSV 248
            MFAS   R TWKGD KSTAAAL++Q+ FEGVIL   YP+ QIDIY QVLQNDGG LVAAVNAA LAL N GVAMSDFVVAC VG+V++TFV DP+SLESASDRPEL LA+  HS KI SCQL  KLPD  SF  A+++AT+GA QIF+VLEYEV+KYS+
Sbjct:    1 MFASPIYRSTWKGDGKSTAAALVMQKAFEGVILTASYPKSQIDIYFQVLQNDGGALVAAVNAASLALANVGVAMSDFVVACGVGFVDDTFVVDPSSLESASDRPELTLAVLSHSAKIASCQLDRKLPDGESFERALEFATSGANQIFKVLEYEVRKYSL 159          
BLAST of Gchil2383.t1 vs. uniprot
Match: A0A2P6NAE9_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NAE9_9EUKA)

HSP 1 Score: 229 bits (583), Expect = 1.810e-67
Identity = 120/242 (49.59%), Postives = 167/242 (69.01%), Query Frame = 0
Query:   16 LEYISLDGLRIDGRLPNEVRKIRCALGALSRADGSAYYEQGNTRVLAAVYGPREPTGRDFE-HDKAIVKCEFSTAMFASTARRRTWKGDRKSTAAALLVQRLFEGVILLTEYPRCQIDIYIQVLQNDGGTLVAAVNAACLALINAGVAMSDFVVACSVGYVENTFVADPNSLESASDRPELILAITPHSGKICSCQLASKLPDNSSFASAMQYATAGAKQIFQVLEYEVKKYSVGLLDSRGM 256
            LEYIS DGLR+DGR P E+R+IRC L   SRA+GSAY+EQGNT+V+AAVYGPR+   +    HD+AI+ CE+S A F++  R++  KGDR+S   +L++++ FE VI+ T +PR QIDI++QVLQ DGGT  A++NAA LALI+AG+ M DFV AC+ G +E T + D N +E ++  P++ LA+ P +  I   Q+ SKLP  + F   M  A  G K I +VL  EV K++  L+ SR +
Sbjct:  384 LEYISPDGLRLDGRRPEELRRIRCQLAVFSRANGSAYFEQGNTKVIAAVYGPRDVGNKTKALHDRAIINCEYSMATFSTGERKKRSKGDRRSAEISLVIKKTFESVIVTTLFPRSQIDIFVQVLQADGGTRCASINAATLALIDAGIPMKDFVCACAAGCIEGTPLLDLNYIEDSAGGPDVPLALLPQTQTIAMLQMDSKLPIET-FEKVMALAMEGCKAIHKVLSEEVMKHTKHLVVSRAV 624          
BLAST of Gchil2383.t1 vs. uniprot
Match: UPI000644D24F (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644D24F)

HSP 1 Score: 216 bits (551), Expect = 6.180e-67
Identity = 112/241 (46.47%), Postives = 160/241 (66.39%), Query Frame = 0
Query:   16 LEYISLDGLRIDGRLPNEVRKIRCALGALSRADGSAYYEQGNTRVLAAVYGPREPTGRDFE-HDKAIVKCEFSTAMFASTARRRT-WKGDRKSTAAALLVQRLFEGVILLTEYPRCQIDIYIQVLQNDGGTLVAAVNAACLALINAGVAMSDFVVACSVGYVENTFVADPNSLESASDRPELILAITPHSGKICSCQLASKLPDNSSFASAMQYATAGAKQIFQVLEYEVKKYSVGLLDSR 254
            L YI+ +GLRIDGR  NE+R++   +G  SRADGSAYYEQGNT++  AVYGPRE        HD+A+V C+FS A F+S++ R+   KGD++S   A L+++ FE  I +  +PR QIDIYIQVLQ+DGG   AA+NAA LA ++AG+ M DFV ACS  Y+E   + D N +E  S   +L+L++ P  G + S  + SK+P +  F S ++ A  G  +IF +++ EVK++S  LL ++
Sbjct:    3 LSYITPEGLRIDGRRSNEIRRLNMRMGVFSRADGSAYYEQGNTKIAVAVYGPREVASNQRALHDRAVVNCDFSVATFSSSSERKIRGKGDKQSFEIAALIKQAFESTIQVNLFPRSQIDIYIQVLQSDGGLKAAAINAATLAAVDAGLPMRDFVCACSATYIEGVPLLDLNHMEERSGGADLLLSVQPQLGGVISLNMESKVPQDM-FESVLELANKGCMKIFALMQAEVKRHSAELLSNQ 242          
BLAST of Gchil2383.t1 vs. uniprot
Match: F0ZRE0_DICPU (RNase_PH domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZRE0_DICPU)

HSP 1 Score: 216 bits (551), Expect = 6.790e-67
Identity = 118/243 (48.56%), Postives = 164/243 (67.49%), Query Frame = 0
Query:   16 LEYISLDGLRIDGRLPNEVRKIRCALGALSRADGSAYYEQGNTRVLAAVYGPRE--PTGRDFEHDKAIVKCEFSTAMFASTARR--RTWKGDRKSTAAALLVQRLFEGVILLTEYPRCQIDIYIQVLQNDGGTLVAAVNAACLALINAGVAMSDFVVACSVGYVENTFVADPNSLESASDRPELILAITPHSGKICSCQLASKLPDNSSFASAMQYATAGAKQIFQVLEYEVKKYSVGLLDSR 254
            L YIS +GLRIDGR  NE+R+I   +G  +RADGSAYYEQGNT+++AAVYGPRE   +G+    D+AIVKCEF+T+ F++T R+  +  KGDR +T  + LV++ FE  I    YPR QI+IYIQVLQ+DGG   AA+NA+ LALI+AG++M DFV A S   ++   V D N +E  S  P+ +L+I P  G + S  + SK+P +  F S ++    G K+IF +L  +VKKYS  L+ ++
Sbjct:    4 LSYISPEGLRIDGRRANELRRINIQMGVSNRADGSAYYEQGNTKIIAAVYGPREISVSGQSI-FDRAIVKCEFATSSFSTTERKPQQKTKGDRATTEISNLVKQAFESTIQTHLYPRSQINIYIQVLQSDGGLKAAAINASTLALIDAGISMKDFVCAVSTSCIDGVAVLDLNHIEERSGGPDCLLSIQPQIGGVISLNMDSKVPQDL-FESVLELGEKGCKKIFSILSDQVKKYSTDLISNQ 244          
The following BLAST results are available for this feature:
BLAST of Gchil2383.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IL73_9FLOR2.060e-16891.89Exosome complex component RRP41 n=1 Tax=Gracilario... [more]
R7Q565_CHOCR2.750e-13776.72Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1G3R3_9STRA6.520e-7548.56Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
R7Q6U6_CHOCR2.630e-7171.70Exosome component 4-like Rrp41-like (Fragment) n=1... [more]
D2VEP3_NAEGR5.800e-7146.69Predicted protein n=2 Tax=Naegleria TaxID=5761 Rep... [more]
A0A8J4PXM0_9MYCE8.550e-7049.79Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
R7QBW5_CHOCR3.010e-6971.70Exosome component 4-like Rrp41-like (Fragment) n=1... [more]
A0A2P6NAE9_9EUKA1.810e-6749.59Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
UPI000644D24F6.180e-6746.47hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F0ZRE0_DICPU6.790e-6748.56RNase_PH domain-containing protein n=1 Tax=Dictyos... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 166..214
e-value: 4.8E-5
score: 23.3
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 33..161
e-value: 2.8E-34
score: 118.5
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 14..248
e-value: 1.8E-70
score: 239.1
NoneNo IPR availablePANTHERPTHR11953:SF0EXOSOME COMPLEX COMPONENT RRP41coord: 17..247
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 17..247
NoneNo IPR availableCDDcd11370RNase_PH_RRP41coord: 23..246
e-value: 1.22688E-101
score: 293.295
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 163..247
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 20..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:302549..303328 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2383.t1Gchil2383.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004400_pilon 302549..303328 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil2383.t1 ID=Gchil2383.t1|Name=Gchil2383.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=260bp
MAPPFKRGRGGGAGGLEYISLDGLRIDGRLPNEVRKIRCALGALSRADGS
AYYEQGNTRVLAAVYGPREPTGRDFEHDKAIVKCEFSTAMFASTARRRTW
KGDRKSTAAALLVQRLFEGVILLTEYPRCQIDIYIQVLQNDGGTLVAAVN
AACLALINAGVAMSDFVVACSVGYVENTFVADPNSLESASDRPELILAIT
PHSGKICSCQLASKLPDNSSFASAMQYATAGAKQIFQVLEYEVKKYSVGL
LDSRGMVAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015847ExoRNase_PH_dom2
IPR001247ExoRNase_PH_dom1
IPR027408PNPase/RNase_PH_dom_sf
IPR036345ExoRNase_PH_dom2_sf
IPR020568Ribosomal_S5_D2-typ_fold