Gchil1273.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil1273.t1
Unique Name	Gchil1273.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	312

Homology

[Close]

BLAST of Gchil1273.t1 vs. uniprot
Match: A0A2V3IR71_9FLOR (Lon N-terminal domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR71_9FLOR)

HSP 1 Score: 373 bits (957), Expect = 1.370e-126
Identity = 202/318 (63.52%), Postives = 239/318 (75.16%), Query Frame = 0

Query:    4 AFTLSPLSFLGTPKTLHRPLHSCHQSQTYPPHHRRPRSAHLN--IQACASRAQPSQEH--------VRNLCVLALPMTSGADVIFPGGSQLLSLSHESADRLLRTVCENTPPEFVYVCVNAWGDPGPVGTLCLVDDVHIDPEQEKATLLCTGVSRLRILHLDEHMCNARVQNFNDDDPTPDVLETISEKEQCLVSTMTQIVQLSIKISEGKDEHQRALTDTLQRVRAFCGQMNEEESRKLLQPWILQLSPQLRRELFSFIVTDLLSVSFMDRKNMLLSTDTGERLERALQGLEPYVKELAAKGAIVSALGQRGDQSIS 311
            AF+ + L FL   ++ HR L S      +   HRRPR+ ++     A +    PSQ          VRNL V+ALPMTSGAD+IFPG SQLLSL  E+A RLLRTVC++ PPEF Y+C+NAWGDP  V TLC++DDVHI P  EK+TLLCTG+SRL IL++DE M NAR Q F D+ P  D L  I+  E+ L+STMTQIVQLSIKISEG+DEHQRAL DTLQRVRAFCGQ+ EE+SRKLLQPWILQLSP LRRE+ SFIV DLLS+SFMDR+ +L +TDTG RLE AL+GLEPYVKELAAKGAIVSALG+ G+Q  S
Sbjct:    4 AFSATSLPFLSHLRS-HRSLLS--PRNRFQATHRRPRTPNVQPLSNAQSPHPHPSQXXXXXXXXTDVRNLTVVALPMTSGADLIFPGASQLLSLPAETAHRLLRTVCDSDPPEFAYMCLNAWGDPSEVATLCVIDDVHISPADEKSTLLCTGISRLHILNIDEKMHNARAQLFYDEPPKEDQLAAITRLEEQLISTMTQIVQLSIKISEGQDEHQRALADTLQRVRAFCGQIGEEQSRKLLQPWILQLSPHLRREILSFIVIDLLSISFMDRRKLLNTTDTGHRLEHALRGLEPYVKELAAKGAIVSALGKEGEQGSS 318

[Close]

BLAST of Gchil1273.t1 vs. uniprot
Match: A0A7S1TC89_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TC89_9RHOD)

HSP 1 Score: 74.3 bits (181), Expect = 1.440e-11
Identity = 64/232 (27.59%), Postives = 108/232 (46.55%), Query Frame = 0

Query:   73 GADVIFPGGSQLLSLSHESADRLLRTVCENTPPEFVYVCVNAWGDPGPVGTLCLVDDVHIDPEQEKATLLCTGVSRLRILHLDE--HMCNARVQNFNDDDPTPDVLETISEKEQCLVSTMTQIVQLSIKISEGKDEHQRALTDTLQRVRAFCGQMNEEESRKLLQPWILQLSPQLRRELFSFIVTDLLSVSFMDRKNMLLSTDTGERLERALQGLEPYVKELAAKGAIVSAL 302
            G   +FPG  +++   +     +   + +  PP F +V V+AWG+   VGTL ++  V +     +++L  TG  R +++   E   +  ARV    DD P     E +S+    L++ +    QL  +++    E Q  +   ++   +     N  +S   +  W+L        E   F V  L  +S M+++ +L    + ERL RA+  L+P VK LAAK AI SAL
Sbjct:   80 GGATMFPGVPRVIETDNA---EIAPALTKEDPPVFGHVLVDAWGETARVGTLAILTKVEMRAGG-RSSLFVTGHFRFQLVDTWEVAGVERARVAIVRDDLPN----ENLSDLCDKLLTELLSATQLIQRLTSSDQERQGEMM--VESTNSAVALTNLVQSMGGMDEWVLA-------EFLGFAVCGLEDLSIMEKRALLGGLSSKERLIRAIDHLDPIVKNLAAKSAIESAL 294

The following BLAST results are available for this feature:

BLAST of Gchil1273.t1 vs. uniprot

BLAST of Gchil1273.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IR71_9FLOR	1.370e-126	63.52	Lon N-terminal domain-containing protein n=1 Tax=G...	[more]
A0A7S1TC89_9RHOD	1.440e-11	27.59	Hypothetical protein n=2 Tax=Compsopogon caeruleus...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 310..311
None	No IPR available	GENE3D	2.30.130.40		coord: 45..165 e-value: 2.9E-7 score: 32.1
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..1
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 2..12
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 13..16
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 17..311
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..16
IPR003111	Lon, substrate-binding domain	PFAM	PF02190	LON_substr_bdg	coord: 75..285 e-value: 2.6E-7 score: 30.7
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 76..285

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004437_pilon	contig	tig00004437_pilon:944163..945098 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1273.t1	Gchil1273.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004437_pilon 944163..945098 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil1273.t1 ID=Gchil1273.t1|Name=Gchil1273.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=312bp
MLAAFTLSPLSFLGTPKTLHRPLHSCHQSQTYPPHHRRPRSAHLNIQACA
SRAQPSQEHVRNLCVLALPMTSGADVIFPGGSQLLSLSHESADRLLRTVC
ENTPPEFVYVCVNAWGDPGPVGTLCLVDDVHIDPEQEKATLLCTGVSRLR
ILHLDEHMCNARVQNFNDDDPTPDVLETISEKEQCLVSTMTQIVQLSIKI
SEGKDEHQRALTDTLQRVRAFCGQMNEEESRKLLQPWILQLSPQLRRELF
SFIVTDLLSVSFMDRKNMLLSTDTGERLERALQGLEPYVKELAAKGAIVS
ALGQRGDQSIS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003111	Lon_substr-bd
IPR015947	PUA-like_sf