Gchil9540.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9540.t1
Unique NameGchil9540.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:4771306..4772289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9540Gchil9540Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 4771306..4772289 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9540.t1.start1Gchil9540.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 4771306..4771308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9540.t1.CDS1Gchil9540.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 4771306..4772289 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9540.t1.exon1Gchil9540.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 4771306..4772289 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9540.t1.stop1Gchil9540.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 4772287..4772289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9540.t1Gchil9540.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 4771306..4772289 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9540.t1 ID=Gchil9540.t1|Name=Gchil9540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=328bp
MKPPTPVQAMDHEGGTIHSVLLVQDRRTGRSEASVERTLRVIPQSMPKVQ
TRHAFYPSDSVQSHQSRSNVANFQGQMNTIQEWAAVRVRPSIYPQRTTRA
LTMRPAALGLVSVSALTSGSVFLRNATRKRKPRVSEPIREDQEICSVVSI
HIPFCVSERENMMGKLQELENNVNLMTPDGMACAARKAAKILLGEGRLLE
DSRKFAPKVDVYLAEDMKCAEKRFAGHVEIEAHRIDRIRKCNQRVPPNSR
KYGVATIVVATTEGVDLACYDEKATIICRLRGALDRISRLRAGQVAGLEL
QWFPEDCRERSLTRAQLCEAFPGLKVV*
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spliced messenger RNA

>Gchil9540.t1 ID=Gchil9540.t1|Name=Gchil9540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00004370_pilon:4771306..4772289+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCCCCTACGCCAGTACAAGCAATGGATCACGAAGGTGGGACGAT
TCATTCAGTACTGTTAGTACAAGACCGTCGAACGGGCCGCAGCGAAGCAT
CTGTGGAGAGAACATTGCGCGTTATACCACAATCAATGCCCAAGGTCCAG
ACAAGACATGCATTCTATCCTAGCGATAGCGTCCAAAGCCATCAATCCCG
CAGCAACGTGGCAAACTTTCAAGGGCAGATGAACACAATACAAGAATGGG
CCGCGGTCAGAGTGAGGCCATCCATATATCCACAACGCACTACTAGGGCT
CTAACGATGCGCCCCGCGGCTTTGGGACTTGTGAGTGTTAGCGCACTCAC
GTCTGGGTCAGTTTTTCTTCGAAACGCAACAAGGAAACGAAAGCCGCGAG
TGAGCGAACCTATACGCGAAGATCAAGAAATTTGTTCTGTCGTTTCTATT
CACATTCCATTTTGTGTATCCGAACGGGAAAACATGATGGGAAAGCTACA
AGAACTTGAGAACAACGTCAATTTGATGACTCCTGATGGAATGGCGTGCG
CAGCACGCAAGGCGGCGAAAATACTGCTCGGGGAGGGAAGACTTCTCGAG
GACTCCCGTAAATTTGCCCCGAAGGTGGACGTGTATCTCGCGGAAGATAT
GAAATGTGCAGAGAAACGGTTCGCTGGGCATGTCGAGATAGAAGCTCATC
GCATTGATCGAATTCGGAAATGTAACCAGAGAGTTCCACCCAACTCAAGA
AAGTATGGGGTAGCTACAATAGTCGTAGCAACTACTGAAGGTGTAGACCT
CGCTTGCTATGACGAGAAAGCCACAATTATTTGCCGATTGCGTGGCGCTC
TGGACCGCATATCCAGGCTTCGAGCAGGTCAAGTTGCCGGGCTTGAGCTT
CAGTGGTTTCCGGAAGATTGCAGAGAGAGATCCTTGACAAGGGCTCAACT
TTGCGAAGCTTTTCCGGGTTTAAAAGTAGTCTAA
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protein sequence of Gchil9540.t1

>Gchil9540.t1 ID=Gchil9540.t1|Name=Gchil9540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=328bp
MKPPTPVQAMDHEGGTIHSVLLVQDRRTGRSEASVERTLRVIPQSMPKVQ
TRHAFYPSDSVQSHQSRSNVANFQGQMNTIQEWAAVRVRPSIYPQRTTRA
LTMRPAALGLVSVSALTSGSVFLRNATRKRKPRVSEPIREDQEICSVVSI
HIPFCVSERENMMGKLQELENNVNLMTPDGMACAARKAAKILLGEGRLLE
DSRKFAPKVDVYLAEDMKCAEKRFAGHVEIEAHRIDRIRKCNQRVPPNSR
KYGVATIVVATTEGVDLACYDEKATIICRLRGALDRISRLRAGQVAGLEL
QWFPEDCRERSLTRAQLCEAFPGLKVV*
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mRNA from alignment at tig00004370_pilon:4771306..4772289+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9540.t1 ID=Gchil9540.t1|Name=Gchil9540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00004370_pilon:4771306..4772289+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCCCCCTACGCCAGTACAAGCAATGGATCACGAAGGTGGGACGAT
TCATTCAGTACTGTTAGTACAAGACCGTCGAACGGGCCGCAGCGAAGCAT
CTGTGGAGAGAACATTGCGCGTTATACCACAATCAATGCCCAAGGTCCAG
ACAAGACATGCATTCTATCCTAGCGATAGCGTCCAAAGCCATCAATCCCG
CAGCAACGTGGCAAACTTTCAAGGGCAGATGAACACAATACAAGAATGGG
CCGCGGTCAGAGTGAGGCCATCCATATATCCACAACGCACTACTAGGGCT
CTAACGATGCGCCCCGCGGCTTTGGGACTTGTGAGTGTTAGCGCACTCAC
GTCTGGGTCAGTTTTTCTTCGAAACGCAACAAGGAAACGAAAGCCGCGAG
TGAGCGAACCTATACGCGAAGATCAAGAAATTTGTTCTGTCGTTTCTATT
CACATTCCATTTTGTGTATCCGAACGGGAAAACATGATGGGAAAGCTACA
AGAACTTGAGAACAACGTCAATTTGATGACTCCTGATGGAATGGCGTGCG
CAGCACGCAAGGCGGCGAAAATACTGCTCGGGGAGGGAAGACTTCTCGAG
GACTCCCGTAAATTTGCCCCGAAGGTGGACGTGTATCTCGCGGAAGATAT
GAAATGTGCAGAGAAACGGTTCGCTGGGCATGTCGAGATAGAAGCTCATC
GCATTGATCGAATTCGGAAATGTAACCAGAGAGTTCCACCCAACTCAAGA
AAGTATGGGGTAGCTACAATAGTCGTAGCAACTACTGAAGGTGTAGACCT
CGCTTGCTATGACGAGAAAGCCACAATTATTTGCCGATTGCGTGGCGCTC
TGGACCGCATATCCAGGCTTCGAGCAGGTCAAGTTGCCGGGCTTGAGCTT
CAGTGGTTTCCGGAAGATTGCAGAGAGAGATCCTTGACAAGGGCTCAACT
TTGCGAAGCTTTTCCGGGTTTAAAAGTAGTCTAA
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Coding sequence (CDS) from alignment at tig00004370_pilon:4771306..4772289+

>Gchil9540.t1 ID=Gchil9540.t1|Name=Gchil9540.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=984bp|location=Sequence derived from alignment at tig00004370_pilon:4771306..4772289+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCCCCCTACGCCAGTACAAGCAATGGATCACGAAGGTGGGACGAT
TCATTCAGTACTGTTAGTACAAGACCGTCGAACGGGCCGCAGCGAAGCAT
CTGTGGAGAGAACATTGCGCGTTATACCACAATCAATGCCCAAGGTCCAG
ACAAGACATGCATTCTATCCTAGCGATAGCGTCCAAAGCCATCAATCCCG
CAGCAACGTGGCAAACTTTCAAGGGCAGATGAACACAATACAAGAATGGG
CCGCGGTCAGAGTGAGGCCATCCATATATCCACAACGCACTACTAGGGCT
CTAACGATGCGCCCCGCGGCTTTGGGACTTGTGAGTGTTAGCGCACTCAC
GTCTGGGTCAGTTTTTCTTCGAAACGCAACAAGGAAACGAAAGCCGCGAG
TGAGCGAACCTATACGCGAAGATCAAGAAATTTGTTCTGTCGTTTCTATT
CACATTCCATTTTGTGTATCCGAACGGGAAAACATGATGGGAAAGCTACA
AGAACTTGAGAACAACGTCAATTTGATGACTCCTGATGGAATGGCGTGCG
CAGCACGCAAGGCGGCGAAAATACTGCTCGGGGAGGGAAGACTTCTCGAG
GACTCCCGTAAATTTGCCCCGAAGGTGGACGTGTATCTCGCGGAAGATAT
GAAATGTGCAGAGAAACGGTTCGCTGGGCATGTCGAGATAGAAGCTCATC
GCATTGATCGAATTCGGAAATGTAACCAGAGAGTTCCACCCAACTCAAGA
AAGTATGGGGTAGCTACAATAGTCGTAGCAACTACTGAAGGTGTAGACCT
CGCTTGCTATGACGAGAAAGCCACAATTATTTGCCGATTGCGTGGCGCTC
TGGACCGCATATCCAGGCTTCGAGCAGGTCAAGTTGCCGGGCTTGAGCTT
CAGTGGTTTCCGGAAGATTGCAGAGAGAGATCCTTGACAAGGGCTCAACT
TTGCGAAGCTTTTCCGGGTTTAAAAGTAGTCTAA
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