Gchil9450.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9450.t1
Unique NameGchil9450.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:4179543..4180568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6500.XP_005101909.1
Preferred nameILKAP
PFAMsPP2C
Max annot lvl33208|Metazoa
KEGG koko:K17500
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006275,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010556,GO:0010564,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0033262,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090329,GO:0140096,GO:1901564,GO:2000112
Evalue6.76e-25
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota,39P56@33154|Opisthokonta,3B9SV@33208|Metazoa,3CT77@33213|Bilateria
EC3.1.3.16
Descriptionprotein serine/threonine phosphatase activity
COG categoryT
BRITEko00000,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9450Gchil9450Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 4179543..4180568 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9450.t1.start1Gchil9450.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 4179543..4179545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9450.t1.CDS1Gchil9450.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 4179543..4180568 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9450.t1.exon1Gchil9450.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 4179543..4180568 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9450.t1.stop1Gchil9450.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 4180566..4180568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9450.t1Gchil9450.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 4179543..4180568 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9450.t1 ID=Gchil9450.t1|Name=Gchil9450.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=342bp
MLCLGRAFTTAGERRAQEDCFVVWEGVHSVWGHIALYAVLDGHCGVAAAE
FVRSRLVSELFGDERWNKSVFPNCDRLLRDAVASLESALLKRSAERRLSD
GTTLCLLLFVNGFMFVANVGDSRALLIRDDATHEPLTVPHSVRHPDELKR
VQQAGAIVRNGRMLGPDKHLDVTRALGDRDHKLDETSALSAEPYISKRQI
KHNERIVLIATDGLWNTPLLDDEELAAMALNTPDSTPLPHRAHGIVSEAL
KFDPRDNVTVIFLQLNVTQDQFSSYIHATSHNEPLPGVRNDHQPKVPPQF
SCLHWETSLPFRSSPPPPKRHNSTLSNFKRFFRLANGRNAY*
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spliced messenger RNA

>Gchil9450.t1 ID=Gchil9450.t1|Name=Gchil9450.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00004370_pilon:4179543..4180568+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTGTCTGGGACGCGCCTTTACGACGGCCGGCGAGCGCCGCGCACA
AGAGGATTGCTTCGTCGTGTGGGAGGGCGTGCATTCCGTGTGGGGTCACA
TTGCGCTTTACGCCGTTCTCGACGGCCATTGCGGCGTTGCCGCCGCTGAG
TTTGTGCGCTCCCGCCTCGTCTCCGAGCTGTTTGGCGATGAACGCTGGAA
CAAGTCCGTGTTTCCGAATTGCGACCGACTTCTGCGCGACGCTGTTGCAA
GCTTGGAGAGCGCGCTGCTCAAGCGCAGCGCTGAGCGCCGTCTCTCGGAC
GGAACTACTCTTTGTCTCCTGCTCTTCGTCAATGGCTTCATGTTCGTCGC
CAACGTCGGCGATAGTCGAGCCCTGCTCATACGTGACGATGCTACGCATG
AACCATTGACCGTTCCGCACAGCGTGCGCCACCCCGACGAGCTCAAGCGC
GTGCAGCAGGCGGGTGCCATTGTGCGCAACGGCCGAATGTTGGGTCCGGA
CAAGCATCTCGATGTCACGCGCGCCCTCGGAGATCGTGATCACAAACTGG
ATGAAACCAGCGCCCTGTCGGCCGAGCCCTACATCTCCAAACGTCAGATC
AAACATAACGAACGTATCGTCCTCATTGCCACCGATGGACTGTGGAACAC
CCCGCTGTTGGACGACGAAGAGCTGGCAGCTATGGCGTTAAATACGCCGG
ACTCAACCCCGCTGCCACACCGCGCCCATGGCATTGTTTCGGAAGCCTTG
AAATTCGATCCTCGCGACAACGTCACAGTAATATTTCTCCAGCTCAATGT
CACTCAAGATCAGTTCAGCAGCTACATTCACGCTACTTCACACAACGAAC
CGTTACCTGGTGTGCGAAACGACCACCAGCCAAAAGTACCCCCGCAGTTC
AGCTGCCTACACTGGGAGACTTCATTGCCCTTCCGCTCATCACCTCCGCC
GCCCAAGCGGCACAACAGCACATTGTCTAACTTCAAGCGTTTTTTTCGTC
TTGCAAACGGCCGAAACGCCTACTGA
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protein sequence of Gchil9450.t1

>Gchil9450.t1 ID=Gchil9450.t1|Name=Gchil9450.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=342bp
MLCLGRAFTTAGERRAQEDCFVVWEGVHSVWGHIALYAVLDGHCGVAAAE
FVRSRLVSELFGDERWNKSVFPNCDRLLRDAVASLESALLKRSAERRLSD
GTTLCLLLFVNGFMFVANVGDSRALLIRDDATHEPLTVPHSVRHPDELKR
VQQAGAIVRNGRMLGPDKHLDVTRALGDRDHKLDETSALSAEPYISKRQI
KHNERIVLIATDGLWNTPLLDDEELAAMALNTPDSTPLPHRAHGIVSEAL
KFDPRDNVTVIFLQLNVTQDQFSSYIHATSHNEPLPGVRNDHQPKVPPQF
SCLHWETSLPFRSSPPPPKRHNSTLSNFKRFFRLANGRNAY*
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mRNA from alignment at tig00004370_pilon:4179543..4180568+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9450.t1 ID=Gchil9450.t1|Name=Gchil9450.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00004370_pilon:4179543..4180568+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGTGTCTGGGACGCGCCTTTACGACGGCCGGCGAGCGCCGCGCACA
AGAGGATTGCTTCGTCGTGTGGGAGGGCGTGCATTCCGTGTGGGGTCACA
TTGCGCTTTACGCCGTTCTCGACGGCCATTGCGGCGTTGCCGCCGCTGAG
TTTGTGCGCTCCCGCCTCGTCTCCGAGCTGTTTGGCGATGAACGCTGGAA
CAAGTCCGTGTTTCCGAATTGCGACCGACTTCTGCGCGACGCTGTTGCAA
GCTTGGAGAGCGCGCTGCTCAAGCGCAGCGCTGAGCGCCGTCTCTCGGAC
GGAACTACTCTTTGTCTCCTGCTCTTCGTCAATGGCTTCATGTTCGTCGC
CAACGTCGGCGATAGTCGAGCCCTGCTCATACGTGACGATGCTACGCATG
AACCATTGACCGTTCCGCACAGCGTGCGCCACCCCGACGAGCTCAAGCGC
GTGCAGCAGGCGGGTGCCATTGTGCGCAACGGCCGAATGTTGGGTCCGGA
CAAGCATCTCGATGTCACGCGCGCCCTCGGAGATCGTGATCACAAACTGG
ATGAAACCAGCGCCCTGTCGGCCGAGCCCTACATCTCCAAACGTCAGATC
AAACATAACGAACGTATCGTCCTCATTGCCACCGATGGACTGTGGAACAC
CCCGCTGTTGGACGACGAAGAGCTGGCAGCTATGGCGTTAAATACGCCGG
ACTCAACCCCGCTGCCACACCGCGCCCATGGCATTGTTTCGGAAGCCTTG
AAATTCGATCCTCGCGACAACGTCACAGTAATATTTCTCCAGCTCAATGT
CACTCAAGATCAGTTCAGCAGCTACATTCACGCTACTTCACACAACGAAC
CGTTACCTGGTGTGCGAAACGACCACCAGCCAAAAGTACCCCCGCAGTTC
AGCTGCCTACACTGGGAGACTTCATTGCCCTTCCGCTCATCACCTCCGCC
GCCCAAGCGGCACAACAGCACATTGTCTAACTTCAAGCGTTTTTTTCGTC
TTGCAAACGGCCGAAACGCCTACTGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:4179543..4180568+

>Gchil9450.t1 ID=Gchil9450.t1|Name=Gchil9450.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00004370_pilon:4179543..4180568+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGTGTCTGGGACGCGCCTTTACGACGGCCGGCGAGCGCCGCGCACA
AGAGGATTGCTTCGTCGTGTGGGAGGGCGTGCATTCCGTGTGGGGTCACA
TTGCGCTTTACGCCGTTCTCGACGGCCATTGCGGCGTTGCCGCCGCTGAG
TTTGTGCGCTCCCGCCTCGTCTCCGAGCTGTTTGGCGATGAACGCTGGAA
CAAGTCCGTGTTTCCGAATTGCGACCGACTTCTGCGCGACGCTGTTGCAA
GCTTGGAGAGCGCGCTGCTCAAGCGCAGCGCTGAGCGCCGTCTCTCGGAC
GGAACTACTCTTTGTCTCCTGCTCTTCGTCAATGGCTTCATGTTCGTCGC
CAACGTCGGCGATAGTCGAGCCCTGCTCATACGTGACGATGCTACGCATG
AACCATTGACCGTTCCGCACAGCGTGCGCCACCCCGACGAGCTCAAGCGC
GTGCAGCAGGCGGGTGCCATTGTGCGCAACGGCCGAATGTTGGGTCCGGA
CAAGCATCTCGATGTCACGCGCGCCCTCGGAGATCGTGATCACAAACTGG
ATGAAACCAGCGCCCTGTCGGCCGAGCCCTACATCTCCAAACGTCAGATC
AAACATAACGAACGTATCGTCCTCATTGCCACCGATGGACTGTGGAACAC
CCCGCTGTTGGACGACGAAGAGCTGGCAGCTATGGCGTTAAATACGCCGG
ACTCAACCCCGCTGCCACACCGCGCCCATGGCATTGTTTCGGAAGCCTTG
AAATTCGATCCTCGCGACAACGTCACAGTAATATTTCTCCAGCTCAATGT
CACTCAAGATCAGTTCAGCAGCTACATTCACGCTACTTCACACAACGAAC
CGTTACCTGGTGTGCGAAACGACCACCAGCCAAAAGTACCCCCGCAGTTC
AGCTGCCTACACTGGGAGACTTCATTGCCCTTCCGCTCATCACCTCCGCC
GCCCAAGCGGCACAACAGCACATTGTCTAACTTCAAGCGTTTTTTTCGTC
TTGCAAACGGCCGAAACGCCTACTGA
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