Gchil9414.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9414.t1
Unique NameGchil9414.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length263
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:3957095..3957883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX48857
PFAMsAlpha_kinase
Max annot lvl2759|Eukaryota
KEGG koko:K08292
KEGG Pathwayko04152,ko04921,map04152,map04921
Evalue3.53e-15
EggNOG OGs28NQ8@1|root,2QVA3@2759|Eukaryota
EC2.7.11.20
Descriptionelongation factor-2 kinase activity
COG categoryS
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9414Gchil9414Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 3957095..3957883 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9414.t1.start1Gchil9414.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 3957095..3957097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9414.t1.CDS1Gchil9414.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 3957095..3957883 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9414.t1.exon1Gchil9414.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 3957095..3957883 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9414.t1.stop1Gchil9414.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 3957881..3957883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9414.t1Gchil9414.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 3957095..3957883 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9414.t1 ID=Gchil9414.t1|Name=Gchil9414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=263bp
MSFITFREGHNELDVERKPFSEGSTRWAFKGIVREGEIKGFGEGTNVVLK
VIKPEAYSSGIRIEEEDITIQKTTSELCYIFNGEGYLFNMEDHQVTKLYA
RIGKLILVDGDFCGNFRQYLRRGEKILIEEMIRGEYDVFNTDWGASRGHF
KIPDFFSHWSWYSTSGLILVCDLQGHRGRPGGPKIDGSTEYFMFTDPIVL
TKTANGILGYHDSGAEGIRNWFDIHHCNSLCIEYGLETEKPKTGKRFSLM
ALRHVGQETLFS*
back to top

spliced messenger RNA

>Gchil9414.t1 ID=Gchil9414.t1|Name=Gchil9414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00004370_pilon:3957095..3957883+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTTTATTACTTTTAGAGAAGGCCATAATGAACTTGATGTGGAACG
CAAACCATTTTCTGAGGGCTCTACGAGATGGGCATTCAAAGGGATAGTAC
GCGAAGGAGAAATCAAGGGCTTTGGGGAAGGTACAAATGTAGTTCTCAAG
GTGATCAAACCGGAAGCATACTCCTCTGGAATTCGAATTGAAGAAGAAGA
CATTACCATTCAAAAAACTACGTCTGAATTATGTTATATTTTCAACGGGG
AGGGATATCTTTTTAATATGGAAGACCATCAAGTTACAAAGCTATATGCA
AGGATTGGGAAACTTATCCTTGTCGACGGTGATTTTTGTGGCAACTTCAG
GCAGTATTTGAGAAGAGGAGAAAAAATCCTAATTGAGGAAATGATACGAG
GGGAGTATGATGTATTCAATACTGATTGGGGTGCGAGTAGAGGCCATTTC
AAGATCCCTGACTTCTTTTCGCATTGGTCCTGGTACTCAACATCGGGACT
GATTCTTGTTTGTGACCTTCAAGGACACAGAGGGCGCCCTGGCGGTCCAA
AAATAGATGGTTCCACGGAGTACTTTATGTTTACAGATCCAATAGTGCTG
ACAAAAACTGCGAACGGTATTCTTGGATACCACGACTCTGGGGCTGAAGG
TATTCGTAATTGGTTCGATATCCACCATTGCAATAGCCTCTGCATAGAGT
ACGGTCTTGAAACCGAGAAGCCAAAAACTGGAAAACGATTCTCTCTGATG
GCTTTGCGACATGTAGGACAGGAAACGTTGTTCTCATGA
back to top

protein sequence of Gchil9414.t1

>Gchil9414.t1 ID=Gchil9414.t1|Name=Gchil9414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=263bp
MSFITFREGHNELDVERKPFSEGSTRWAFKGIVREGEIKGFGEGTNVVLK
VIKPEAYSSGIRIEEEDITIQKTTSELCYIFNGEGYLFNMEDHQVTKLYA
RIGKLILVDGDFCGNFRQYLRRGEKILIEEMIRGEYDVFNTDWGASRGHF
KIPDFFSHWSWYSTSGLILVCDLQGHRGRPGGPKIDGSTEYFMFTDPIVL
TKTANGILGYHDSGAEGIRNWFDIHHCNSLCIEYGLETEKPKTGKRFSLM
ALRHVGQETLFS*
back to top

mRNA from alignment at tig00004370_pilon:3957095..3957883+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9414.t1 ID=Gchil9414.t1|Name=Gchil9414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00004370_pilon:3957095..3957883+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTTTTATTACTTTTAGAGAAGGCCATAATGAACTTGATGTGGAACG
CAAACCATTTTCTGAGGGCTCTACGAGATGGGCATTCAAAGGGATAGTAC
GCGAAGGAGAAATCAAGGGCTTTGGGGAAGGTACAAATGTAGTTCTCAAG
GTGATCAAACCGGAAGCATACTCCTCTGGAATTCGAATTGAAGAAGAAGA
CATTACCATTCAAAAAACTACGTCTGAATTATGTTATATTTTCAACGGGG
AGGGATATCTTTTTAATATGGAAGACCATCAAGTTACAAAGCTATATGCA
AGGATTGGGAAACTTATCCTTGTCGACGGTGATTTTTGTGGCAACTTCAG
GCAGTATTTGAGAAGAGGAGAAAAAATCCTAATTGAGGAAATGATACGAG
GGGAGTATGATGTATTCAATACTGATTGGGGTGCGAGTAGAGGCCATTTC
AAGATCCCTGACTTCTTTTCGCATTGGTCCTGGTACTCAACATCGGGACT
GATTCTTGTTTGTGACCTTCAAGGACACAGAGGGCGCCCTGGCGGTCCAA
AAATAGATGGTTCCACGGAGTACTTTATGTTTACAGATCCAATAGTGCTG
ACAAAAACTGCGAACGGTATTCTTGGATACCACGACTCTGGGGCTGAAGG
TATTCGTAATTGGTTCGATATCCACCATTGCAATAGCCTCTGCATAGAGT
ACGGTCTTGAAACCGAGAAGCCAAAAACTGGAAAACGATTCTCTCTGATG
GCTTTGCGACATGTAGGACAGGAAACGTTGTTCTCATGA
back to top

Coding sequence (CDS) from alignment at tig00004370_pilon:3957095..3957883+

>Gchil9414.t1 ID=Gchil9414.t1|Name=Gchil9414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=789bp|location=Sequence derived from alignment at tig00004370_pilon:3957095..3957883+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTTTTATTACTTTTAGAGAAGGCCATAATGAACTTGATGTGGAACG
CAAACCATTTTCTGAGGGCTCTACGAGATGGGCATTCAAAGGGATAGTAC
GCGAAGGAGAAATCAAGGGCTTTGGGGAAGGTACAAATGTAGTTCTCAAG
GTGATCAAACCGGAAGCATACTCCTCTGGAATTCGAATTGAAGAAGAAGA
CATTACCATTCAAAAAACTACGTCTGAATTATGTTATATTTTCAACGGGG
AGGGATATCTTTTTAATATGGAAGACCATCAAGTTACAAAGCTATATGCA
AGGATTGGGAAACTTATCCTTGTCGACGGTGATTTTTGTGGCAACTTCAG
GCAGTATTTGAGAAGAGGAGAAAAAATCCTAATTGAGGAAATGATACGAG
GGGAGTATGATGTATTCAATACTGATTGGGGTGCGAGTAGAGGCCATTTC
AAGATCCCTGACTTCTTTTCGCATTGGTCCTGGTACTCAACATCGGGACT
GATTCTTGTTTGTGACCTTCAAGGACACAGAGGGCGCCCTGGCGGTCCAA
AAATAGATGGTTCCACGGAGTACTTTATGTTTACAGATCCAATAGTGCTG
ACAAAAACTGCGAACGGTATTCTTGGATACCACGACTCTGGGGCTGAAGG
TATTCGTAATTGGTTCGATATCCACCATTGCAATAGCCTCTGCATAGAGT
ACGGTCTTGAAACCGAGAAGCCAAAAACTGGAAAACGATTCTCTCTGATG
GCTTTGCGACATGTAGGACAGGAAACGTTGTTCTCATGA
back to top