Gchil9260.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9260.t1
Unique Name	Gchil9260.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	349

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:2892491..2893537 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	345341.KUTG_00568
PFAMs	adh_short,adh_short_C2
Max annot lvl	201174\|Actinobacteria
Evalue	1.03e-45
EggNOG OGs	COG1028@1\|root,COG1028@2\|Bacteria,2IC68@201174\|Actinobacteria,4DY5B@85010\|Pseudonocardiales
Description	Enoyl-(Acyl carrier protein) reductase
COG category	IQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9260	Gchil9260	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 2892491..2893537 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9260.t1.start1	Gchil9260.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 2892491..2892493 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9260.t1.CDS1	Gchil9260.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 2892491..2893537 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9260.t1.exon1	Gchil9260.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 2892491..2893537 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9260.t1.stop1	Gchil9260.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 2893535..2893537 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9260.t1	Gchil9260.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 2892491..2893537 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:2892491..2893537+
coding sequence from alignment at tig00004370_pilon:2892491..2893537+

mRNA sequence

>Gchil9260.t1 ID=Gchil9260.t1|Name=Gchil9260.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=349bp
MPCNAHSFRAPTAVSSPASPASPIMTSSPLHSTTKPCPVASTTSLPPHSR
SPSSQPRRSILNVVVTGGSTGIGEAIVRVFAEAGHRVLFTYLTRRNDAER
LQALWPHVAAAPLDQADVAGVVSFARTVSKWAGSAGVHVLVNNAALGSAT
VQRYVQQQIAVNDFDKVCSEQLPDSAVRLLKRAQNDLALMRVNALGPLWV
TDALSDALSKAATSAGRASVVFIGSVGGGSSAVFPEYCAADLMSKAATTY
LSKHLAAQHVMDNIDVMCISPGATETEMFRKSTLANIQNVDAFVDSMPKR
KLIQPIEVAKSVYWLAAESPPGIFHGSVLDASMGLAVRPGLQTENQSR*

spliced messenger RNA

>Gchil9260.t1 ID=Gchil9260.t1|Name=Gchil9260.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00004370_pilon:2892491..2893537+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTGCAATGCACACAGCTTCCGCGCGCCCACCGCTGTCTCATCACC
GGCCTCCCCTGCCTCGCCCATCATGACCTCGAGTCCGTTGCACTCAACCA
CAAAGCCCTGCCCCGTTGCGTCCACTACGTCACTGCCGCCACACTCGCGC
TCCCCGTCGTCGCAGCCCCGCCGTTCAATACTCAACGTCGTCGTCACAGG
CGGCTCTACTGGAATTGGCGAGGCAATTGTTCGCGTATTTGCCGAGGCTG
GCCATCGTGTCCTCTTCACCTATCTCACCCGTCGAAACGACGCTGAGCGC
CTGCAAGCGCTCTGGCCGCACGTAGCCGCTGCGCCGCTCGACCAGGCCGA
CGTGGCGGGCGTCGTGTCGTTTGCCCGCACCGTCTCAAAGTGGGCGGGAT
CGGCAGGCGTGCACGTTCTGGTTAACAACGCCGCACTGGGCTCGGCCACG
GTGCAGCGCTACGTGCAGCAACAAATAGCCGTCAACGATTTTGACAAAGT
GTGTTCCGAGCAACTTCCAGACTCTGCCGTCAGACTGCTCAAGCGTGCGC
AGAACGATTTGGCACTGATGCGAGTCAACGCGCTGGGTCCGTTGTGGGTC
ACGGATGCACTTTCAGATGCGCTCAGCAAGGCGGCCACGTCGGCTGGCAG
AGCCAGCGTCGTCTTCATTGGCTCTGTTGGAGGCGGCAGCAGCGCCGTGT
TCCCTGAATATTGTGCTGCTGACCTAATGAGCAAGGCTGCCACTACGTAC
CTATCCAAGCATCTGGCAGCGCAGCATGTTATGGACAACATTGACGTGAT
GTGTATCTCGCCAGGTGCCACAGAGACGGAAATGTTCCGAAAGAGCACTT
TGGCAAACATTCAGAACGTTGATGCGTTCGTCGACAGCATGCCGAAGCGG
AAGCTGATTCAGCCGATCGAGGTGGCAAAAAGCGTTTACTGGCTTGCTGC
GGAAAGCCCACCGGGCATTTTCCACGGCTCGGTGTTGGACGCTTCAATGG
GACTAGCCGTCCGGCCTGGGCTGCAGACAGAAAATCAGTCTCGCTAG

protein sequence of Gchil9260.t1

>Gchil9260.t1 ID=Gchil9260.t1|Name=Gchil9260.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=349bp
MPCNAHSFRAPTAVSSPASPASPIMTSSPLHSTTKPCPVASTTSLPPHSR
SPSSQPRRSILNVVVTGGSTGIGEAIVRVFAEAGHRVLFTYLTRRNDAER
LQALWPHVAAAPLDQADVAGVVSFARTVSKWAGSAGVHVLVNNAALGSAT
VQRYVQQQIAVNDFDKVCSEQLPDSAVRLLKRAQNDLALMRVNALGPLWV
TDALSDALSKAATSAGRASVVFIGSVGGGSSAVFPEYCAADLMSKAATTY
LSKHLAAQHVMDNIDVMCISPGATETEMFRKSTLANIQNVDAFVDSMPKR
KLIQPIEVAKSVYWLAAESPPGIFHGSVLDASMGLAVRPGLQTENQSR*

mRNA from alignment at tig00004370_pilon:2892491..2893537+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9260.t1 ID=Gchil9260.t1|Name=Gchil9260.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00004370_pilon:2892491..2893537+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTGCAATGCACACAGCTTCCGCGCGCCCACCGCTGTCTCATCACC
GGCCTCCCCTGCCTCGCCCATCATGACCTCGAGTCCGTTGCACTCAACCA
CAAAGCCCTGCCCCGTTGCGTCCACTACGTCACTGCCGCCACACTCGCGC
TCCCCGTCGTCGCAGCCCCGCCGTTCAATACTCAACGTCGTCGTCACAGG
CGGCTCTACTGGAATTGGCGAGGCAATTGTTCGCGTATTTGCCGAGGCTG
GCCATCGTGTCCTCTTCACCTATCTCACCCGTCGAAACGACGCTGAGCGC
CTGCAAGCGCTCTGGCCGCACGTAGCCGCTGCGCCGCTCGACCAGGCCGA
CGTGGCGGGCGTCGTGTCGTTTGCCCGCACCGTCTCAAAGTGGGCGGGAT
CGGCAGGCGTGCACGTTCTGGTTAACAACGCCGCACTGGGCTCGGCCACG
GTGCAGCGCTACGTGCAGCAACAAATAGCCGTCAACGATTTTGACAAAGT
GTGTTCCGAGCAACTTCCAGACTCTGCCGTCAGACTGCTCAAGCGTGCGC
AGAACGATTTGGCACTGATGCGAGTCAACGCGCTGGGTCCGTTGTGGGTC
ACGGATGCACTTTCAGATGCGCTCAGCAAGGCGGCCACGTCGGCTGGCAG
AGCCAGCGTCGTCTTCATTGGCTCTGTTGGAGGCGGCAGCAGCGCCGTGT
TCCCTGAATATTGTGCTGCTGACCTAATGAGCAAGGCTGCCACTACGTAC
CTATCCAAGCATCTGGCAGCGCAGCATGTTATGGACAACATTGACGTGAT
GTGTATCTCGCCAGGTGCCACAGAGACGGAAATGTTCCGAAAGAGCACTT
TGGCAAACATTCAGAACGTTGATGCGTTCGTCGACAGCATGCCGAAGCGG
AAGCTGATTCAGCCGATCGAGGTGGCAAAAAGCGTTTACTGGCTTGCTGC
GGAAAGCCCACCGGGCATTTTCCACGGCTCGGTGTTGGACGCTTCAATGG
GACTAGCCGTCCGGCCTGGGCTGCAGACAGAAAATCAGTCTCGCTAG

Coding sequence (CDS) from alignment at tig00004370_pilon:2892491..2893537+

>Gchil9260.t1 ID=Gchil9260.t1|Name=Gchil9260.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1047bp|location=Sequence derived from alignment at tig00004370_pilon:2892491..2893537+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTGCAATGCACACAGCTTCCGCGCGCCCACCGCTGTCTCATCACC
GGCCTCCCCTGCCTCGCCCATCATGACCTCGAGTCCGTTGCACTCAACCA
CAAAGCCCTGCCCCGTTGCGTCCACTACGTCACTGCCGCCACACTCGCGC
TCCCCGTCGTCGCAGCCCCGCCGTTCAATACTCAACGTCGTCGTCACAGG
CGGCTCTACTGGAATTGGCGAGGCAATTGTTCGCGTATTTGCCGAGGCTG
GCCATCGTGTCCTCTTCACCTATCTCACCCGTCGAAACGACGCTGAGCGC
CTGCAAGCGCTCTGGCCGCACGTAGCCGCTGCGCCGCTCGACCAGGCCGA
CGTGGCGGGCGTCGTGTCGTTTGCCCGCACCGTCTCAAAGTGGGCGGGAT
CGGCAGGCGTGCACGTTCTGGTTAACAACGCCGCACTGGGCTCGGCCACG
GTGCAGCGCTACGTGCAGCAACAAATAGCCGTCAACGATTTTGACAAAGT
GTGTTCCGAGCAACTTCCAGACTCTGCCGTCAGACTGCTCAAGCGTGCGC
AGAACGATTTGGCACTGATGCGAGTCAACGCGCTGGGTCCGTTGTGGGTC
ACGGATGCACTTTCAGATGCGCTCAGCAAGGCGGCCACGTCGGCTGGCAG
AGCCAGCGTCGTCTTCATTGGCTCTGTTGGAGGCGGCAGCAGCGCCGTGT
TCCCTGAATATTGTGCTGCTGACCTAATGAGCAAGGCTGCCACTACGTAC
CTATCCAAGCATCTGGCAGCGCAGCATGTTATGGACAACATTGACGTGAT
GTGTATCTCGCCAGGTGCCACAGAGACGGAAATGTTCCGAAAGAGCACTT
TGGCAAACATTCAGAACGTTGATGCGTTCGTCGACAGCATGCCGAAGCGG
AAGCTGATTCAGCCGATCGAGGTGGCAAAAAGCGTTTACTGGCTTGCTGC
GGAAAGCCCACCGGGCATTTTCCACGGCTCGGTGTTGGACGCTTCAATGG
GACTAGCCGTCCGGCCTGGGCTGCAGACAGAAAATCAGTCTCGCTAG