Gchil9259.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9259.t1
Unique Name	Gchil9259.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	266

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:2890848..2891645 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703374.1
PFAMs	CCT,zf-B_box
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K19720
KEGG Pathway	ko04611,ko04926,ko04933,ko04974,ko05146,map04611,map04926,map04933,map04974,map05146
Evalue	1.43e-08
EggNOG OGs	COG5641@1\|root,KOG1601@2759\|Eukaryota
Description	transcription, DNA-templated
COG category	K
BRITE	ko00000,ko00001,ko00536

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9259	Gchil9259	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 2890848..2891645 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9259.t1.start1	Gchil9259.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 2890848..2890850 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9259.t1.CDS1	Gchil9259.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 2890848..2891645 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9259.t1.exon1	Gchil9259.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 2890848..2891645 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9259.t1.stop1	Gchil9259.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 2891643..2891645 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9259.t1	Gchil9259.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 2890848..2891645 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:2890848..2891645+
coding sequence from alignment at tig00004370_pilon:2890848..2891645+

mRNA sequence

>Gchil9259.t1 ID=Gchil9259.t1|Name=Gchil9259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=266bp
MVRNCEMCPEDHAVLATIYCAADACYLCAKCDAVVHNANRLAQRHVRTAV
GACEMEGSSIHDESDECLMPDMCSMRQQDDTDALTFEDAADYDFSELGLG
RMPGLTGVEEIGAWGEGKLNKNWDVSWEEVVQDGFVHVVPEMEPRTDKTA
DEAVKVESVIVEEKKELRLSVKRGREEQVVDAEEEQMVLERRRKRRKEAL
ERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFVRKVEMALYRKYGNL
YREHLHELDSSTASC*

spliced messenger RNA

>Gchil9259.t1 ID=Gchil9259.t1|Name=Gchil9259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00004370_pilon:2890848..2891645+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCGAAACTGCGAAATGTGCCCCGAGGATCACGCAGTGTTGGCCAC
CATATATTGTGCAGCCGACGCGTGCTACCTGTGCGCAAAATGTGACGCTG
TCGTGCACAACGCAAACCGCCTGGCGCAACGCCACGTGCGCACCGCAGTG
GGTGCATGCGAAATGGAAGGTTCATCCATTCATGATGAATCGGATGAATG
TTTGATGCCAGACATGTGCAGCATGCGCCAACAGGACGACACGGACGCGT
TAACGTTCGAAGATGCTGCCGACTACGACTTCAGCGAGTTGGGTCTGGGG
CGCATGCCGGGGCTCACTGGTGTGGAGGAAATCGGCGCATGGGGGGAGGG
CAAGCTCAACAAAAACTGGGACGTGAGCTGGGAAGAGGTGGTGCAGGACG
GCTTCGTGCACGTGGTACCAGAAATGGAGCCACGCACAGACAAGACAGCC
GATGAGGCTGTCAAGGTGGAGAGTGTGATTGTGGAGGAGAAGAAGGAACT
ACGGCTGAGCGTAAAGCGTGGGAGAGAGGAGCAAGTAGTGGACGCGGAGG
AGGAACAAATGGTGCTGGAAAGAAGGCGAAAGCGGAGAAAGGAGGCGCTG
GAAAGATTCCGGTCCAAGAGAGCAAACCGGTCTTTCGCCAAGCGTGTGCG
CTACGAATGTCGCAAGCAGCTGGCAGACAGCAGACCGAGAGTGAAGGGGC
GCTTTGTGCGGAAGGTCGAAATGGCCTTGTACCGCAAATACGGCAATTTG
TACAGAGAGCATTTGCACGAGCTGGACAGTTCGACCGCATCGTGCTGA

protein sequence of Gchil9259.t1

>Gchil9259.t1 ID=Gchil9259.t1|Name=Gchil9259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=266bp
MVRNCEMCPEDHAVLATIYCAADACYLCAKCDAVVHNANRLAQRHVRTAV
GACEMEGSSIHDESDECLMPDMCSMRQQDDTDALTFEDAADYDFSELGLG
RMPGLTGVEEIGAWGEGKLNKNWDVSWEEVVQDGFVHVVPEMEPRTDKTA
DEAVKVESVIVEEKKELRLSVKRGREEQVVDAEEEQMVLERRRKRRKEAL
ERFRSKRANRSFAKRVRYECRKQLADSRPRVKGRFVRKVEMALYRKYGNL
YREHLHELDSSTASC*

mRNA from alignment at tig00004370_pilon:2890848..2891645+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9259.t1 ID=Gchil9259.t1|Name=Gchil9259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=798bp|location=Sequence derived from alignment at tig00004370_pilon:2890848..2891645+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTCGAAACTGCGAAATGTGCCCCGAGGATCACGCAGTGTTGGCCAC
CATATATTGTGCAGCCGACGCGTGCTACCTGTGCGCAAAATGTGACGCTG
TCGTGCACAACGCAAACCGCCTGGCGCAACGCCACGTGCGCACCGCAGTG
GGTGCATGCGAAATGGAAGGTTCATCCATTCATGATGAATCGGATGAATG
TTTGATGCCAGACATGTGCAGCATGCGCCAACAGGACGACACGGACGCGT
TAACGTTCGAAGATGCTGCCGACTACGACTTCAGCGAGTTGGGTCTGGGG
CGCATGCCGGGGCTCACTGGTGTGGAGGAAATCGGCGCATGGGGGGAGGG
CAAGCTCAACAAAAACTGGGACGTGAGCTGGGAAGAGGTGGTGCAGGACG
GCTTCGTGCACGTGGTACCAGAAATGGAGCCACGCACAGACAAGACAGCC
GATGAGGCTGTCAAGGTGGAGAGTGTGATTGTGGAGGAGAAGAAGGAACT
ACGGCTGAGCGTAAAGCGTGGGAGAGAGGAGCAAGTAGTGGACGCGGAGG
AGGAACAAATGGTGCTGGAAAGAAGGCGAAAGCGGAGAAAGGAGGCGCTG
GAAAGATTCCGGTCCAAGAGAGCAAACCGGTCTTTCGCCAAGCGTGTGCG
CTACGAATGTCGCAAGCAGCTGGCAGACAGCAGACCGAGAGTGAAGGGGC
GCTTTGTGCGGAAGGTCGAAATGGCCTTGTACCGCAAATACGGCAATTTG
TACAGAGAGCATTTGCACGAGCTGGACAGTTCGACCGCATCGTGCTGA

Coding sequence (CDS) from alignment at tig00004370_pilon:2890848..2891645+

>Gchil9259.t1 ID=Gchil9259.t1|Name=Gchil9259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=798bp|location=Sequence derived from alignment at tig00004370_pilon:2890848..2891645+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTCGAAACTGCGAAATGTGCCCCGAGGATCACGCAGTGTTGGCCAC
CATATATTGTGCAGCCGACGCGTGCTACCTGTGCGCAAAATGTGACGCTG
TCGTGCACAACGCAAACCGCCTGGCGCAACGCCACGTGCGCACCGCAGTG
GGTGCATGCGAAATGGAAGGTTCATCCATTCATGATGAATCGGATGAATG
TTTGATGCCAGACATGTGCAGCATGCGCCAACAGGACGACACGGACGCGT
TAACGTTCGAAGATGCTGCCGACTACGACTTCAGCGAGTTGGGTCTGGGG
CGCATGCCGGGGCTCACTGGTGTGGAGGAAATCGGCGCATGGGGGGAGGG
CAAGCTCAACAAAAACTGGGACGTGAGCTGGGAAGAGGTGGTGCAGGACG
GCTTCGTGCACGTGGTACCAGAAATGGAGCCACGCACAGACAAGACAGCC
GATGAGGCTGTCAAGGTGGAGAGTGTGATTGTGGAGGAGAAGAAGGAACT
ACGGCTGAGCGTAAAGCGTGGGAGAGAGGAGCAAGTAGTGGACGCGGAGG
AGGAACAAATGGTGCTGGAAAGAAGGCGAAAGCGGAGAAAGGAGGCGCTG
GAAAGATTCCGGTCCAAGAGAGCAAACCGGTCTTTCGCCAAGCGTGTGCG
CTACGAATGTCGCAAGCAGCTGGCAGACAGCAGACCGAGAGTGAAGGGGC
GCTTTGTGCGGAAGGTCGAAATGGCCTTGTACCGCAAATACGGCAATTTG
TACAGAGAGCATTTGCACGAGCTGGACAGTTCGACCGCATCGTGCTGA